Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C20
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 134 8e-33
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 111 5e-26
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 93 3e-20
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 89 3e-19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 86 4e-18
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 85 6e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 84 1e-17
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 82 5e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 80 2e-16
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 79 6e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 78 1e-15
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 76 3e-15
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 74 2e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 74 2e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 71 9e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 71 1e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 68 1e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 1e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 64 1e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 61 9e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 58 9e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 9e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 48 9e-07
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.085
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 31 0.15
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.60
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 1.8
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.4
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.4
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 134 bits (324), Expect = 8e-33
Identities = 68/117 (58%), Positives = 85/117 (72%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
FQSMGL+ +L+ I K+G+K PTPIQRKTIP+ L G+DVV MARTGSGKTA FV+P++E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 355 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQXF 525
L N RALILSP RELALQT++ V++ K T L S AI+GG S+E+ F
Sbjct: 131 L----KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQF 183
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 111 bits (268), Expect = 5e-26
Identities = 59/116 (50%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Frame = +1
Query: 172 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 351
+FQSM LS P+LKG++ G++ PT IQ KTIP+AL GKD+V A TGSGKTA F++PILE
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 352 KLLV-PNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIE 516
+LL P PT R LIL PTRELA+Q ++ FT + +GG S++
Sbjct: 320 RLLYRPKKVPT----TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLK 371
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 92.7 bits (220), Expect = 3e-20
Identities = 48/113 (42%), Positives = 72/113 (63%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F+ L +L GI + G+++P+PIQ ++IPIAL+G+D++A A+ G+GKTA FV+P LEK
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 355 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESI 513
+ T ++ LIL PTRELALQT + + LGK + GG ++
Sbjct: 106 V------DTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTL 152
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 89.4 bits (212), Expect = 3e-19
Identities = 45/110 (40%), Positives = 69/110 (62%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F+ +G+ + + K G+K PTPIQ++ IP+ L +DV+ +A+TGSGKTA F LP++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 355 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 504
L N P+P A++L+PTRELA Q +G G+ S I+GG
Sbjct: 108 LW---NNPSP---FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGG 151
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 85.8 bits (203), Expect = 4e-18
Identities = 45/110 (40%), Positives = 66/110 (60%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F + LS + K I + G++ T IQ+++IP L G+DV+ A+TGSGKT F++P +E
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 355 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 504
L KP G + +I+SPTRELALQ +EL K+ T ++GG
Sbjct: 151 LYALKFKPRNGTGV--IIISPTRELALQIFGVAKELLKYHHQTFGIVIGG 198
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 85.0 bits (201), Expect = 6e-18
Identities = 45/103 (43%), Positives = 62/103 (60%)
Frame = +1
Query: 163 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 342
S F L + + I K +++PT +Q +TIP+AL GKD+VA ARTGSGKTA +++P
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIP 71
Query: 343 ILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 471
ILE LL + + AL+L PTRELA Q + +L F
Sbjct: 72 ILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAF 114
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 83.8 bits (198), Expect = 1e-17
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F + +S + +G+ + YK+PTPIQ T P L G+DVV +A TGSGKT F +P L+
Sbjct: 169 FDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 355 LL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 504
L + +NK P R L++SPTRELA+QT + L + T L + + GG
Sbjct: 227 LNGLSDNKSVP----RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGG 273
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 82.2 bits (194), Expect = 5e-17
Identities = 41/115 (35%), Positives = 68/115 (59%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F + L+ P + + T IQ++ IP AL G+D++ A+TGSGKT F++P++E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 355 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQ 519
L K T L AL++SPTRELA+QT + ++G+ ++ I+GG + ++
Sbjct: 101 LY--RKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKE 153
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 79.8 bits (188), Expect = 2e-16
Identities = 41/112 (36%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F+ G VLK + + G++ PTPIQ++ P+A++G+D+V ++ TGSGKT + LP +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 355 LLVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 504
+ N +P +PG L+L+PTRELA+Q + + GK + + + + GG
Sbjct: 184 I---NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGG 232
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 78.6 bits (185), Expect = 6e-16
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Frame = +1
Query: 172 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 351
++ GLS + I GY++PT IQ + IP +G+DV+ +A+TGSGKT F+LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 352 KLLVPNNKP-TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIE 516
+ + +P G+ A+I++PTRELA+Q R + K + + GG I+
Sbjct: 479 H--IKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIK 532
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.8 bits (183), Expect = 1e-15
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
++ GL +LK + K YK+P+ IQR IP+ L KD++ +A TGSGKTA F++P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 355 L--LVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQ 519
+ L P + A++L+PTRELA Q + + G +++GG + E+
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEE 367
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 76.2 bits (179), Expect = 3e-15
Identities = 43/114 (37%), Positives = 66/114 (57%)
Frame = +1
Query: 172 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 351
+F+ M L +L+GI GY+ P+ +Q + I G+DV+A A++G+GKTA F + IL+
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 352 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESI 513
+ ++ +ALILSPTRELA+Q V LG + A +GG S+
Sbjct: 82 SI------DLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSV 129
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 73.7 bits (173), Expect = 2e-14
Identities = 43/110 (39%), Positives = 65/110 (59%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F M L +L+GI G+++P+ IQ++ I L +DV+A A++G+GKTA F + +L+K
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 355 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 504
+ T K +ALIL+PTRELA Q + V LG + A +GG
Sbjct: 81 I------DTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 73.7 bits (173), Expect = 2e-14
Identities = 38/97 (39%), Positives = 57/97 (58%)
Frame = +1
Query: 172 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 351
+FQS+ + + + +G+K+ TP+Q IP+ L KD+V A TGSGKT ++LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 352 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL 462
K+ + T L ALI++PTRELA Q +EL
Sbjct: 62 KV---TRRDTDETGLGALIVAPTRELATQIFNVTKEL 95
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 71.3 bits (167), Expect = 9e-14
Identities = 41/116 (35%), Positives = 64/116 (55%)
Frame = +1
Query: 172 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 351
A+ LS +L ++K G+ +P PIQ IP A G D++ A TGSGKT F +PILE
Sbjct: 123 AWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE 182
Query: 352 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQ 519
L + K ++AL+++PTRELA Q + + + +I GG ++++
Sbjct: 183 HCL----RNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQK 234
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 70.9 bits (166), Expect = 1e-13
Identities = 47/125 (37%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 354
F S L+ +L+ I GY QPTP+Q+ +IPI +G+D++A A+TGSGKTA F+ PIL
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 355 LLVPNNKPTP-----GKNLR-------ALILSPTRELALQTLRFVRELGKFTGLTSAAIL 498
P G R LIL+PTREL Q R+ + + A+
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVY 290
Query: 499 GGESI 513
GG I
Sbjct: 291 GGADI 295
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 67.7 bits (158), Expect = 1e-12
Identities = 44/111 (39%), Positives = 61/111 (54%)
Frame = +1
Query: 172 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 351
+F +G+S ++ + +PT IQ I L G++ + A+TGSGKTA F LPI+E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 352 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 504
K +K G + ALIL+PTRELA+Q LG L A I+GG
Sbjct: 68 KW----SKDPSG--IFALILTPTRELAIQIDEQFAALGANLNLKHALIVGG 112
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 1e-12
Identities = 37/108 (34%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Frame = +1
Query: 172 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTG--KDVVAMARTGSGKTACFVLPI 345
+F+ + L +LKGI +++P+ IQ K +P+ L+ ++++ +++G+GKTA F L +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 346 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSA 489
L + V + P P +A+ L+P+RELA Q + V E+GK+T + +A
Sbjct: 175 LSR--VDASVPKP----QAICLAPSRELARQIMDVVTEMGKYTEVKTA 216
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 64.5 bits (150), Expect = 1e-11
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Frame = +1
Query: 166 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 345
S F+ L +L+ IT G++ P+ +Q+ IP ++ G DV+ A++G GKTA FVL
Sbjct: 50 STGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLST 109
Query: 346 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESIEQ 519
L+++ +P G+ + L+L TRELA Q K+ + +A GG +I+Q
Sbjct: 110 LQQI-----EPVDGE-VSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQ 162
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.3 bits (142), Expect = 9e-11
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +1
Query: 190 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKD-VVAMARTGSGKTACFVLPILEKLLVP 366
LS +++ G+++ TP+Q++ + ++ V A+TG+GKT F+L + +L
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKG 104
Query: 367 NNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGES 510
+ K + ++ILSPTRELALQ R+L TG+ + +GG S
Sbjct: 105 KPRLNSSK-IHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 58.0 bits (134), Expect = 9e-10
Identities = 36/91 (39%), Positives = 52/91 (57%)
Frame = +1
Query: 208 KGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPG 387
+ + K+ + T IQR IP + +D++A A TGSGKT ++ PIL+KL + PG
Sbjct: 59 ENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQL----HVPG 114
Query: 388 KNLRALILSPTRELALQTLRFVRELGKFTGL 480
RA+I++PTREL Q R +L T L
Sbjct: 115 -GYRAIIVAPTRELCEQIYRQAEKLSFGTSL 144
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.0 bits (134), Expect = 9e-10
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Frame = +1
Query: 220 KRGYKQPTPIQRKTIPIALT--GKDVVAMARTGSGKTACFVLPILEKLL-VPNNKPTPGK 390
K PT IQ +P L KD A+TGSGKT ++LPI+++L+ +P N T
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTS 215
Query: 391 NLRALILSPTRELALQTLRFVRELGK---FTGLTSAAILGGE 507
+ A+I++PTREL Q +L + S ++GGE
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGE 257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 9e-07
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Frame = +1
Query: 175 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALT----------GKDVVAMARTGSGKT 324
F S+ +S +++ + K+ + +Q +P+ L G DV A TGSGKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 325 ACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 504
+V+PI++ L +++ P LR +++ PTREL +Q + GL A G
Sbjct: 188 LSYVIPIVQCL---SHRTVP--RLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQ 242
Query: 505 ESI 513
+S+
Sbjct: 243 KSL 245
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.5 bits (68), Expect = 0.085
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 250 QRKTIPIALTGKDVVAMARTGSGKTACFVLP 342
Q + I L+GKDV + TG GK+ C+ LP
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLP 554
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 30.7 bits (66), Expect = 0.15
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 280 GKDVVAMA-RTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVR 456
GK +A++ TGSGKTA F P K P +P + + LIL +ELALQ L+ R
Sbjct: 45 GKRRIAVSLATGSGKTALF--PHFIKY-APTLRPN---SEQCLILVHRKELALQALKHCR 98
Query: 457 E 459
E
Sbjct: 99 E 99
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 0.60
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +1
Query: 217 TKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNL 396
T R ++ Q I G V+ T SGK+ + +PIL+ LL N
Sbjct: 305 TSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS------- 357
Query: 397 RALILSPTRELA 432
A + PT+ LA
Sbjct: 358 TAFFVFPTKSLA 369
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 247 IQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKL 357
IQ PIA T ++++ A TG+GKT +L IL +L
Sbjct: 523 IQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNEL 560
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 193 SFPVLKGITKRGYKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKL 357
S +L T Y+ IQ PIA T ++++ A TG+GKT +L +L+ +
Sbjct: 263 SMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTI 318
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 427 LALQTLRFVRELGKFTGLTSAAILGGESIEQXF 525
+A TL F+R +G G+T ++ E + Q F
Sbjct: 485 MATATLMFIRTMGGSIGITVGEVIFNERVTQSF 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,538
Number of Sequences: 5004
Number of extensions: 36498
Number of successful extensions: 141
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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