Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C17
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I...   132   4e-32
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    29   0.59 
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    25   9.6  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   9.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.6  

>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
           subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  132 bits (319), Expect = 4e-32
 Identities = 62/84 (73%), Positives = 71/84 (84%)
 Frame = +2

Query: 257 QAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHG 436
           Q+G  V K  R TT YMTKYERAR+LGTRALQI+M APV+V+LEGETDPLQIAMKEL   
Sbjct: 59  QSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQK 118

Query: 437 KIPIIIRRYLPDHSYEDWSIDELI 508
           KIP+++RRYLPD SYEDWS+ ELI
Sbjct: 119 KIPLLVRRYLPDGSYEDWSVAELI 142


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 426 NSFMAICNGSVSPSSSTMTGAHIAICKALVPKTLARSYLVMYRVVIRLD 280
           +SF  + +   SPSSS +   +I +C   +P+ L  S L    +V+ LD
Sbjct: 263 SSFTIVNDPLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLD 311


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 645 IFEFQYLIYIYDDEIK 598
           IF+F YL+YIY D  K
Sbjct: 58  IFQFSYLLYIYIDLTK 73


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 386 EGETDPLQIAMKELKHGKIPI 448
           +GET P+ I MK+ K   +P+
Sbjct: 39  DGETRPIAIEMKDSKGNTVPV 59


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 369 LSWWNLKEKLIHYK 410
           +SWW+L + LIH K
Sbjct: 735 ISWWSLDDLLIHQK 748


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 396 VSPSSSTMTGAHIAICKALVPKTLARSYLVMYRVVIRLDLSTP 268
           + P  ST+   HIA+C A +    +R+ ++ Y ++   DLS P
Sbjct: 77  IVPDCSTIV--HIALCAAYLIVIDSRNTVLSYPLMKHRDLSKP 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,682
Number of Sequences: 5004
Number of extensions: 37183
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)