Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C12
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    32   0.083
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   3.1  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   4.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   7.2  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   7.2  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.5  
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 204 HFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHF 383
           H + +V D   + KFY E+ GMK++    F E  E + +    +       G        
Sbjct: 14  HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEEN-EFSLSFLAFDGPGALNHGVERSKREG 72

Query: 384 VVELTYNYGVTHYE 425
           ++ELTYN+G    E
Sbjct: 73  ILELTYNFGTEKKE 86


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 60  RYKFIIIHRLNNHTKYI 110
           RYK  I+H LNN  KY+
Sbjct: 589 RYKTNIVHSLNNEQKYV 605


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 137 SDLCNDKXVYVLCVIIQTVNNYKFITKSETTIFNNVQ 27
           SD+ + K  Y+L +++   +  KF  ++  T+ N++Q
Sbjct: 189 SDMLDKKNKYLLRMLVYNAHKQKFYNETLPTLLNHMQ 225


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 142 SELKS*AQSC*IAKWLAVVLFISYLKSQI 228
           SE+K  +    I+ W++++LF+S+L  ++
Sbjct: 505 SEIKQYSSLILISLWISLILFVSFLNRRL 533


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 196 RPLTILLFNNFELMTLVQN*VI 131
           + L +L+FNN +L TL+QN ++
Sbjct: 131 KQLFLLIFNNGKLRTLLQNAIV 152


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 425 FVMRYTIVVGQFNNKMCIFRAISNHGF 345
           + M+ +I++G  +   C+F ++SN+ F
Sbjct: 523 YKMKLSIILGVIHMTFCLFLSLSNYRF 549


>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 502 IGQLLVCALFRLSLDCTVMPRKSFPCS*CVT 410
           +G++ +  L +L +  T  PR+SF CS  +T
Sbjct: 76  LGEMSLKFLIKLIVKMTDCPRQSFSCSELIT 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,635
Number of Sequences: 5004
Number of extensions: 50802
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)