Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C12
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786... 83 1e-16
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 79 3e-15
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536... 68 6e-12
05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710 53 2e-07
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451... 30 1.4
08_02_0440 + 17192122-17192691,17193947-17194912 30 1.4
03_05_0050 + 20285475-20286092,20287481-20287840 29 3.2
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 29 4.3
06_01_0144 + 1089090-1091390 28 5.6
05_03_0361 - 12961101-12961201,12961683-12961772,12961910-129619... 28 5.6
>05_03_0055 -
7863410-7863530,7864205-7864314,7864341-7864553,
7865342-7865406,7865511-7865635,7865936-7866164,
7866270-7866348
Length = 313
Score = 83.4 bits (197), Expect = 1e-16
Identities = 53/131 (40%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Frame = +3
Query: 195 RALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPED 374
R LH V++V D T KFY E LGMK+LR + E R++ +GYGPED
Sbjct: 87 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------ERYTNAFLGYGPED 135
Query: 375 THFVVELTYNYGVTHYEQGNDF--LGITVQ---SSESLKRAQTNN-----WPIKEHNG-L 521
+HFVVELTYNYGV Y+ G F GI V+ + L +A+ P+K +
Sbjct: 136 SHFVVELTYNYGVESYDIGTAFGHFGIAVEDVAKTVDLIKAKGGTVTREPGPVKGGKSVI 195
Query: 522 KYVEAPGGYKF 554
++E P GYKF
Sbjct: 196 AFIEDPDGYKF 206
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 79.0 bits (186), Expect = 3e-15
Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Frame = +3
Query: 177 SKMVSGRALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMV 356
+K + R LH V++V D T KFY E LGMK+LR + E +++ +
Sbjct: 77 AKSDNRRLLHVVYRVGDIDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFL 125
Query: 357 GYGPEDTHFVVELTYNYGVTHYEQGNDF--LGITVQ---SSESLKRAQTNN-----WPIK 506
GYG ED HFVVELTYNYGV Y+ G F GI V + L RA+ P+K
Sbjct: 126 GYGAEDNHFVVELTYNYGVDKYDIGAGFGHFGIAVDDVAKTVELIRAKGGKVTREPGPVK 185
Query: 507 -EHNGLKYVEAPGGYKFYI 560
+ +VE P GYKF I
Sbjct: 186 GGKTVIAFVEDPDGYKFEI 204
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/92 (34%), Positives = 52/92 (56%)
Frame = +3
Query: 210 VFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVV 389
+ +V + FY + GM++LR + N Y +++ M+GYGPED + V+
Sbjct: 218 MLRVGNLDRAISFYEKACGMELLRKRD---------NPEY--KYTVAMMGYGPEDKNAVL 266
Query: 390 ELTYNYGVTHYEQGNDFLGITVQSSESLKRAQ 485
ELTYNYGVT Y++GN + I + + + K A+
Sbjct: 267 ELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAE 298
>08_01_0610 -
5367271-5367312,5367737-5367805,5368208-5368360,
5368441-5368548,5368689-5368736,5368868-5369083,
5369195-5369259,5369478-5369602,5369675-5369793
Length = 314
Score = 68.1 bits (159), Expect = 6e-12
Identities = 42/119 (35%), Positives = 58/119 (48%)
Frame = +3
Query: 195 RALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPED 374
R LH V++V D T K Y E GMK+LR + E +++ +G+GPED
Sbjct: 24 RLLHAVYRVGDLDRTIKCYTECFGMKLLRKRDVPE-----------EKYTNAFLGFGPED 72
Query: 375 THFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVEAPGGYK 551
T+F +ELTYNYGV Y+ G F + + + K A+ IK K PG K
Sbjct: 73 TNFALELTYNYGVDKYDIGAGFGHFAIATEDVYKLAE----KIKSSCCCKITREPGPVK 127
Score = 64.1 bits (149), Expect = 9e-11
Identities = 37/111 (33%), Positives = 58/111 (52%)
Frame = +3
Query: 210 VFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVV 389
+ +V D + KFY + LGMK+LR ++ + +++ M+GY ED V+
Sbjct: 160 MLRVGDLDRSIKFYEKALGMKLLRKKDVPD-----------YKYTIAMLGYADEDKTTVI 208
Query: 390 ELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVEAPG 542
ELTYNYGVT Y +GN + + + + + K A+ KE G K + PG
Sbjct: 209 ELTYNYGVTEYTKGNAYAQVAIGTEDVYKSAEAVELVTKELGG-KILRQPG 258
>05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710
Length = 92
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +3
Query: 354 VGYGPEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVE 533
+GYGPED + V+ELTYNYGV Y++GN + I + + + K A+ + NG +
Sbjct: 1 MGYGPEDKNAVLELTYNYGVKEYDKGNAYAQIAISTDDVYKTAE-----VIRQNGGQITR 55
Query: 534 APG 542
PG
Sbjct: 56 EPG 58
>12_01_0556 -
4514686-4514868,4515168-4515290,4515381-4515617,
4515747-4516358
Length = 384
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -1
Query: 425 FVMRYTIVVGQFNNKMCIFRAISNHGFAPSVCIRSIASCLTSFTKLFMAENLHSEDFPIK 246
+ + +VVG N+ M I +S+HG S+ IRS +T + M L S P+K
Sbjct: 169 YAAQRVLVVGCGNSGMEIAYDLSSHGANTSIVIRSPLHVMTK-ELIHMGMKLASWSLPVK 227
Query: 245 F 243
F
Sbjct: 228 F 228
>08_02_0440 + 17192122-17192691,17193947-17194912
Length = 511
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 380 MCIFRAISNHGFAPSVC-IRSIASCLTSFTKLFMAENLHSE 261
+C+FR++ G P+V S+ CL S +L AE+L E
Sbjct: 307 LCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAESLLDE 347
>03_05_0050 + 20285475-20286092,20287481-20287840
Length = 325
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 240 AKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGY 362
A F ++G +V+ E E + C+G Y NR +V Y
Sbjct: 151 ASFAAAVMGFRVVAFEPVLENLQRICDGVYLNRVQDQVVVY 191
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 333 NRWSKTMVGYGPEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQT 488
N WS + PED++ + + T E +FLG+T +L+ QT
Sbjct: 80 NLWSVRIFSSNPEDSYVLSMMKPPLNDTDEEAKRNFLGLTSVEDRTLQPGQT 131
>06_01_0144 + 1089090-1091390
Length = 766
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -1
Query: 497 PVVSLRPLQTLT*LYCDAKEIISLFVMRYTIVVGQFNNKMCIFRAISNHGFAPSVCIRSI 318
PVV P + C + L VM TIV+ N + F++++N +A S I S+
Sbjct: 357 PVVLASPYFFVVNYLCFPVVVFGLCVM--TIVLCGNGNVLYAFKSLTNDNYAVSSGILSL 414
Query: 317 ASCL 306
CL
Sbjct: 415 TKCL 418
>05_03_0361 -
12961101-12961201,12961683-12961772,12961910-12961980,
12962079-12962158,12962264-12962324,12963620-12963681,
12963826-12963833,12964273-12964609,12964946-12965089,
12965235-12965339
Length = 352
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +3
Query: 210 VFKVADRTLTAKFYREILGMKVLRHEEFSE--------GCEAACNGPYANRWSKTMVGYG 365
+F+V D ++ FY ++GM +L+ +F E G E + P + +T+ +G
Sbjct: 199 MFRVKDPKVSLDFYSRVMGMSLLKRLDFPEMKFSLYFLGYEDVESAP-TDPVKRTVWTFG 257
Query: 366 PEDTHFVVELTYNYG 410
T +ELT+N+G
Sbjct: 258 QRAT---LELTHNWG 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,978
Number of Sequences: 37544
Number of extensions: 296073
Number of successful extensions: 619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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