Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C10
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 255 5e-69
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 119 3e-28
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 112 5e-26
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 103 2e-23
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 103 3e-23
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 75 7e-15
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 73 4e-14
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 69 6e-13
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 63 4e-11
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 62 9e-11
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 59 6e-10
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 52 7e-08
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 50 2e-07
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 41 1e-04
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 41 1e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 41 1e-04
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 40 3e-04
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 38 0.001
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 36 0.005
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 35 0.009
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.027
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 33 0.027
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.062
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.44
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.58
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 1.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.3
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 3.1
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.1
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 4.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 4.1
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 5.4
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 7.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.5
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.5
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 255 bits (624), Expect = 5e-69
Identities = 117/173 (67%), Positives = 147/173 (84%)
Frame = +1
Query: 133 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 312
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEVLKQL
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63
Query: 313 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 492
E+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVYNMS
Sbjct: 64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI 123
Query: 493 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
EDPGD++++ +GGL EQIR+LREVIELPL NPELF+RVGI PPKG LLYGPPG
Sbjct: 124 EDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPG 176
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 119 bits (287), Expect = 3e-28
Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 4/176 (2%)
Frame = +1
Query: 136 EKAFQDYRKKLMEHK----EVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 303
E Q Y +K+ + + + L+ Q L + +++ LQ G VGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 304 KQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYN 483
K + + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 484 MSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
M E D TY +GGL++QI++++EVIELP+ +PELF +GI PKG LLYGPPG
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPG 189
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 112 bits (269), Expect = 5e-26
Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Frame = +1
Query: 157 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 330
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+ L+ + + I
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAI 71
Query: 331 VKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDV 510
V +T G YVV LD+ LK VAL + ++ LP E D + + ++ DV
Sbjct: 72 VGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDV 131
Query: 511 TYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+Y+ +GGL Q +++RE +ELPL +L+ ++GI PP+G LLYGPPG
Sbjct: 132 SYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPG 178
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 103 bits (248), Expect = 2e-23
Identities = 47/109 (43%), Positives = 68/109 (62%)
Frame = +1
Query: 325 FIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPG 504
+++ ++VV ++ ++ G RV D I LP ++DP V M E+
Sbjct: 115 YVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKP 174
Query: 505 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
DVTY +GG +EQI +LREV+ELPL++PE FV++GI PPKG +LYGPPG
Sbjct: 175 DVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPG 223
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 103 bits (246), Expect = 3e-23
Identities = 50/164 (30%), Positives = 94/164 (57%)
Frame = +1
Query: 160 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 339
+++ +H +E + +++LK ++ + N + ++ VG L+++ ++ + +
Sbjct: 73 QRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVG-TLEEIIDDDHAIVS 131
Query: 340 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 519
T GP Y V +DK+ L+ G V L ++I+ L + DP++ M + +Y+
Sbjct: 132 TAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYA 191
Query: 520 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
IGGL+ QI++++E +ELPL +PEL+ +GI PPKG +LYG PG
Sbjct: 192 DIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPG 235
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 75.4 bits (177), Expect = 7e-15
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +1
Query: 499 PGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
P VT+S+IGGLQ QI Q+R+++ELP NPELF I PP+G LLYGPPG
Sbjct: 273 PSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPG 323
Score = 59.3 bits (137), Expect = 5e-10
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +1
Query: 493 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
E P +V +S IGG +E ++L+E +E PL + E F R+G+ PPKG LLYGPPG
Sbjct: 541 ESP-NVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPG 592
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/91 (37%), Positives = 53/91 (58%)
Frame = +1
Query: 379 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 558
++ +L G + ++ + I+ LP E D V M ++ YS IGGL +QI +L
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELF 198
Query: 559 EVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
E I LP+ + F ++G+ PPKGCL++GPPG
Sbjct: 199 EAIVLPMQQADKFRKLGVKPPKGCLMFGPPG 229
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 68.9 bits (161), Expect = 6e-13
Identities = 29/64 (45%), Positives = 42/64 (65%)
Frame = +1
Query: 460 EVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLY 639
E +P+ +V Y IGG + Q+ Q+RE++ELPL +P+LF +GI PP+G L+Y
Sbjct: 205 EGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMY 264
Query: 640 GPPG 651
GPPG
Sbjct: 265 GPPG 268
Score = 60.9 bits (141), Expect = 2e-10
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +1
Query: 505 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+V + IGGL+E R+LRE +++P+M E F+R G+TP KG L +GPPG
Sbjct: 493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPG 541
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 62.9 bits (146), Expect = 4e-11
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +1
Query: 487 SHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+ E P D++ S IGGL + I +L E++ +P+ +PE++ GI PP+G LL+GPPG
Sbjct: 164 NREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPG 218
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = +1
Query: 499 PGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
PG V+++ IG L+ +L+ I P+ PEL+ VGI+ P G LL+GPPG
Sbjct: 487 PG-VSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPG 536
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 61.7 bits (143), Expect = 9e-11
Identities = 24/49 (48%), Positives = 40/49 (81%)
Frame = +1
Query: 505 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
++ +++IGGL++ I QL+E++ LPL+ PE+F+ + ITPP+G L +GPPG
Sbjct: 368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPG 416
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 58.8 bits (136), Expect = 6e-10
Identities = 22/48 (45%), Positives = 35/48 (72%)
Frame = +1
Query: 508 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+++ ++GGL I QL+E++ LPL+ PE+F R + PP+G L +GPPG
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPG 310
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 118 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 243
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 52.0 bits (119), Expect = 7e-08
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +1
Query: 508 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
V + IGGL+E LR+ ++LPL PELF + G+ P G LLYGPPG
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPG 698
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 50.4 bits (115), Expect = 2e-07
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +1
Query: 505 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVG--ITPPKGCLLYGPPG 651
DV++ IGG+ E + QL + + PL PE+F G ++ PKG LLYGPPG
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPG 135
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +1
Query: 487 SHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+HE + ++ + G+ E ++ E ++ L NP+ + R+G P+G +L GPPG
Sbjct: 286 NHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPG 339
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 505 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+V + I GL+ L+E + LP+ P+LF G P G LLYGPPG
Sbjct: 125 NVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 484 MSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+S+ +P V +S I GL + L+E + P + PELF + P +G LL+GPPG
Sbjct: 370 ISNHEP--VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPG 422
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 505 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+V +S + G+ E +L E+++ L +P F R+G P+G LL GPPG
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPG 310
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 505 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
+V + I GL+ L+E + P + P+LF + P +G LL+GPPG
Sbjct: 455 EVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPG 502
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +1
Query: 106 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 285
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 286 IVGEVLKQLTEEKFIVK 336
GEVL+Q+ E K
Sbjct: 591 QKGEVLEQVVAESEAAK 607
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 523 IGGLQEQIRQL-REVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
IGGL + + R L P + ++GI KG LLYGPPG
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPG 314
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 109 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 273
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 523 IGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 651
I G+QE +R++IE P+ ++ + + P G LL+G PG
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPG 650
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 136 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 261
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 127 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 276
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.58
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 115 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 291
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 292 GE 297
E
Sbjct: 463 SE 464
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 287 ICPTLCRAFRSFSLLSYCLVKSFSWSRP---SLSRDSTSLCSMSFFL*SWKA 141
+ PTL R RS S+L + L KSF+ + P + +R T +MS S+ A
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 172 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 309
E + +R+ + ++Q+KDL+ D DL+ L+S+ V + K+
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASLQKE 1661
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = -1
Query: 429 GHVKGNSCSSFKLVFVKLPTTANNVARAISSFYNK-----FFFCELFQDFSNYL 283
GH+ C FK +V N+V +S +Y K FF C L + SN L
Sbjct: 1429 GHLMHLGC--FKNYYVARSMYRNDVTAGLSEYYYKYSTAKFFMCPLCRSLSNVL 1480
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 154 YRKKLMEHKEVESR----LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTE 318
Y+ K + HKEVE R + EG +L ++ +K++ + LQ Q + LK++ E
Sbjct: 86 YKAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSI--LQRTAQYI-RSLKEMEE 141
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 630 TSFGWSDTDSNKQLWVH*GQFNHLSQLSNLFLKTSYGGIGHITRI-LMTHVVN*GINLSR 454
TSFG+++ +SN+Q L L++ + Y G G TR+ L+T V N G+
Sbjct: 179 TSFGFAEFESNEQF------SRALEALNDFVVPPLYEG-GPSTRLSLITDVENEGLYREW 231
Query: 453 QMSHYCKS 430
Q S Y ++
Sbjct: 232 QTSRYARN 239
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 577 LMNPELFVRVGITPPKGCLLYGPPG 651
L N + + GI +G LLYGPPG
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPG 252
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 208 RDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVL-KQLTEEKFIVKAT 342
RD+L+DL+++ + +NDL+ L Q+V E++ LT+ K I++ +
Sbjct: 40 RDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTS 86
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 310 AVSRLLQLFVQHFVGLSGHFHSCHIVWSNLLVGH 209
A + L V GLSG ++ CH WSN + +
Sbjct: 247 AQNNSLDFIVNDHQGLSGDYNLCHF-WSNFEIAN 279
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 118 DMEPLREKAFQDYRKKLMEHKEV 186
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 115 SDMEPLREKAFQDYRKKLME-HKEV-ESRLKEGRDQLKDLTKQYDKSENDLKA 267
S ++ + KA ++ RK+ E KE+ +SRL+E + K L K + ++LKA
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 414 NSCSSFKLVFVKLPTTANNVARAISSFY 331
N C S ++F L A AR SSFY
Sbjct: 1294 NMCQSHHVIFWDLIDVATTFARVDSSFY 1321
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 9.5
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 130 LREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSE-----NDLKALQSVGQIVG 294
LRE FQ + K + + L RDQ+ DLTK E N LK + S ++
Sbjct: 17 LRENVFQPVIDE--RTKRLSAHL---RDQVNDLTKSSSSKEEGIADNSLKEVSS-SEVSD 70
Query: 295 EVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTR 411
V ++ + K +T+GPR R + K LK G R
Sbjct: 71 NVGMEVDQPKV---STSGPR--DNNRNKWAKKHLKKGKR 104
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 157 RKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKA 267
R +L++ + KE D LK +YD+ EN+LKA
Sbjct: 396 RNQLLQINRNINSTKENSDYLKT---EYDEMENELKA 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,917
Number of Sequences: 5004
Number of extensions: 50349
Number of successful extensions: 204
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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