Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C09
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 213 2e-56
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.25
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 28 1.0
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 3.1
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 26 4.1
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.5
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 5.5
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 9.5
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 25 9.5
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 213 bits (519), Expect = 2e-56
Identities = 96/180 (53%), Positives = 133/180 (73%), Gaps = 4/180 (2%)
Frame = +2
Query: 116 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 295
++T+RILI+SD H+G+ E DPVRG DSF++F E+L +A + DVD+ILLGGD+F KPS
Sbjct: 15 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR 74
Query: 296 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT----VNYEDPNLNISYPILSIHGNH 463
+++ +R CLGDKP +ELLSD T +NY DPN+N++ P+ SIHGNH
Sbjct: 75 KALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNH 134
Query: 464 DDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRL 643
DDP G G S+LDIL +TGLVNYFG+ + ++ +SP+LLQKG T+LALYG+S+++D+RL
Sbjct: 135 DDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERL 194
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 274 KQITS*KYQINITLYRKRQNFFKSYKAIFSAYRIIFHETKMN 149
+ +T+ + + I L R+ + YK +FS YR+ F ++N
Sbjct: 28 RNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLN 69
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 28.3 bits (60), Expect = 1.0
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = -1
Query: 348 LSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSK-------AIKLS 190
L P Q R +S +N L A S S S+KSTS T + TS K ++ S
Sbjct: 134 LKPEQNTRPVS-EVNASLDLNTA-SRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQS 191
Query: 189 SPRTGSFSMKP 157
SP S S +P
Sbjct: 192 SPNLASLSKQP 202
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 276 SNRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEM 97
++RSPP S K S C + SS+ + GS+ + E +L SS H+
Sbjct: 166 NHRSPPASCKRLSSCESSGSPSSRVV---GSLQGSYCPSGTHLHEGSLLLEDSSARHSSD 222
Query: 96 S 94
S
Sbjct: 223 S 223
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 104 AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLG 262
+WSP L I +A +I+L E P R + I +V S+A + D++ +G
Sbjct: 198 SWSPKGDLAIGLAENIYLWSKELGPTRVLEESI--YDVSSVAYSYNGDILAVG 248
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 383 KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 499
K ++ +N D ++ I P+L N DD +G+ + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 527 NYFGKW--TDYTHVRISPVLL 583
NYFG TDY H+ ++P+LL
Sbjct: 168 NYFGNLDATDYPHLFLNPILL 188
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 200 IAFEE-VLSLAVQCDVDLILLGGDL 271
+ FEE V S+ CD+D +L GD+
Sbjct: 866 LPFEERVFSIHPNCDIDALLSNGDV 890
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 326 RKYCLGDKPVSIELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDI 505
RK D+PV I+ L+ QIK ++N + +L + GN + P S +
Sbjct: 70 RKTLFDDRPVEIQELTFQIKQSLSSLNSDIASLQ-----QVVKGNRNKPAQMNQHSENVV 124
Query: 506 LSI-TGLVNYFGKWTDYTHVR 565
+S+ L N + D +R
Sbjct: 125 VSLQNSLANTSMTFKDILEIR 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,175
Number of Sequences: 5004
Number of extensions: 54902
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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