Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C07
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    99   2e-22
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   2.8  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   8.6  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score =   99 bits (238), Expect = 2e-22
 Identities = 44/96 (45%), Positives = 64/96 (66%)
 Frame = +2

Query: 278 AGPPEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIXGNLRDYFV 457
           +GPP+ VI LG +    + ++VC+     +PYFNAPI+LENK QIGKIDE+ G +   + 
Sbjct: 24  SGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYF 83

Query: 458 SVKLGENVKAKSFKEGQQFFIDPAKLLPLKRFLPQP 565
           +VK  E + + SFK G + ++   KL+PL RFLP+P
Sbjct: 84  TVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKP 119


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +2

Query: 287 PEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKE--QIGKIDEIXGNLR-DYFV 457
           PE ++  G Y  +V  DL     I    Y   P+F    E  Q+ ++ EI GN   D   
Sbjct: 201 PELLLRSGSYNHSV--DLYAFGCIVFEIYSLKPLFPGRNETDQLNRVCEILGNPGIDELD 258

Query: 458 SVKLGENVKAKSFKEGQQFFIDPAKLLPLKRFLPQ 562
           ++      K  + + G  F + P K  P+++ LPQ
Sbjct: 259 TLHYWSQAKELAKRLG--FMLPPTKPYPIQKLLPQ 291


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 543 KGSNFAGSMKNCCPSLKLLALTF 475
           K   + G+ KN CPSL+++   F
Sbjct: 328 KNGMYVGTAKNLCPSLRVVDYDF 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,069
Number of Sequences: 5004
Number of extensions: 27716
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)