Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C07
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...   110   9e-25
Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score =  110 bits (264), Expect = 9e-25
 Identities = 51/96 (53%), Positives = 65/96 (67%)
 Frame = +2

Query: 275 DAGPPEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIXGNLRDYF 454
           D GPPE V+ +G +    QDD+VC      +PYFNAPI+ +NKEQ+GKIDEI G+  +  
Sbjct: 53  DQGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSPGENG 112

Query: 455 VSVKLGENVKAKSFKEGQQFFIDPAKLLPLKRFLPQ 562
            SV L + VKA SF+   Q +IDP KLLP+ RFLPQ
Sbjct: 113 FSVTLSQGVKASSFEPESQLYIDPGKLLPVDRFLPQ 148


>Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical
           protein F28H7.11 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 389 FLENKEQIGKIDEIXGNLRDYFVSVKLGENVKAKSFKEGQQFFID 523
           FL  K ++ ++  I  + +DYF    L  N+    +KE  + FI+
Sbjct: 152 FLSRKNRVERLSYIQESFKDYFGRDPLEINIIIVQYKEATEDFIE 196


>AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical
           protein C33C12.5 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 401 KEQIGKIDEIXGNLRDYFVSVKLGENVKAK 490
           K+Q+ K++EI GN+  +  S  +G N+++K
Sbjct: 184 KQQVAKLNEIRGNIYLFVSSSMVGFNLRSK 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,475
Number of Sequences: 27780
Number of extensions: 155889
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)