Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C05
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    58   6e-10
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   3.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   3.1  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   3.1  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    24   7.2  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    24   9.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   9.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   9.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    24   9.6  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 57.6 bits (133), Expect = 6e-10
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 103 LNDLNQYLAXKSYVSGYTPSQADVQVFEQVGXAP-AANLPXVLRWYNXIASYTSA 264
           L  LN +L  KS++ GY PSQAD  VF+ VG AP  A  P   RWY  IA+Y  A
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA 66


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 103 LNDLNQYLAXKSYVSGYTPSQADVQVF 183
           L+ +++YL   ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 PPVLNPRLPPQQRKTTMTT 359
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 241 DYTIVVXGEG*RPAXCQLAQILEHQLE 161
           +Y +VV G G  P  C +   L  QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 43  KSCYTKRNYGCRRR*NLPRALNDLNQY 123
           K C +++N GC RR  L R L  L  +
Sbjct: 94  KCCESEQNNGCGRRNQLARRLAFLGSF 120


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 249 FIHFG*TQNMVSGXPAH*PPVLNPRLPPQ 335
           F HF       S  P H PP+L   +P Q
Sbjct: 473 FSHFDPLYTRPSSHPLHPPPILGLPVPAQ 501


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 100  ALNDLNQYLAXKSYVSGYTPSQADVQVFEQVGXAPAANLPXVLRWYNXIASY 255
            +L+ +  YL+   Y    T  Q + Q+F      PA  L     W N + +Y
Sbjct: 4647 SLDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNY 4698


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +1

Query: 4    SYSFSHPAVWLSTKSCYTKRNYGCRRR*NLPRALNDLNQYLAXKSYVSGYTPSQADV 174
            S+S +HPA     +   +  NY         R  NDL QY      ++ YT  + D+
Sbjct: 1911 SFSTTHPATKRWERREISNFNYLQIVNTLAGRTYNDLTQYPVFPWVIADYTSKELDL 1967


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 328 GSRGFSTGGQWAGXPETM 275
           G R F +G  W G P T+
Sbjct: 572 GERHFDSGNDWHGNPSTV 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,693
Number of Sequences: 5004
Number of extensions: 19957
Number of successful extensions: 43
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)