Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C05
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 51 4e-07
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 47 5e-06
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 44 6e-05
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 29 0.97
01_07_0025 + 40565296-40565497,40565591-40566075 28 3.0
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 27 6.9
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 26 9.1
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431... 26 9.1
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 50.8 bits (116), Expect = 4e-07
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +1
Query: 88 NLPRALNDLNQYLAXKSYVSGYTPSQADVQVFEQVGXAPAANLPXVLRWYNXIAS 252
N L L++YL +SY+SGY S+ D+ VF + APAA+ V RWY+ I++
Sbjct: 28 NSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISA 82
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 47.2 bits (107), Expect = 5e-06
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 103 LNDLNQYLAXKSYVSGYTPSQADVQVFEQVGXAPAANLPXVLRWYNXIAS 252
L L Q+L+ K+YVSG S+ D++VF V P A P RWY+ +A+
Sbjct: 14 LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 43.6 bits (98), Expect = 6e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 103 LNDLNQYLAXKSYVSGYTPSQADVQVFEQVGXAPAANLPXVLRWYNXI 246
L L++YL +SY+SGY S D+ V+ AP+++ V RW+ I
Sbjct: 14 LKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 29.5 bits (63), Expect = 0.97
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 1 CSYSFSHPAVWLSTKSCYTKRNYGCR 78
C F H VWL T C KRNY CR
Sbjct: 154 CVLQFDHHCVWLGT--CIAKRNY-CR 176
>01_07_0025 + 40565296-40565497,40565591-40566075
Length = 228
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Frame = -1
Query: 337 CW----GGSRGFSTGGQWAGXPETMFCVQPKCMKQ 245
CW GGSR GG W + V P+C K+
Sbjct: 84 CWRRGGGGSRAGGGGGAWRASGKEKLVVAPRCGKR 118
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 10 SFSHPAVWLSTKSCYTKRNYGCRRR*NLPRALNDLNQYLAXKSYVSGYTPS 162
SFS + + K KR+Y C R LP + + Q++ + TPS
Sbjct: 445 SFSSHSPFSQEKGNNMKRHYDCAREEYLPLGRSSMEQHIYANNQSQILTPS 495
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 303 PPVLNPRLPPQQRKTTMTTTFDLFW 377
PP NP PPQ+ +T + ++W
Sbjct: 53 PPPPNPPSPPQEEETAVGRRLRVYW 77
>01_06_0445 -
29441472-29442152,29442244-29442357,29442959-29443186,
29443284-29443586
Length = 441
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 271 KTWSQGHQPIDRRC*THGSRPSS 339
+T++Q HQ RC HG RPSS
Sbjct: 208 RTYAQSHQ----RCSNHGGRPSS 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,576,659
Number of Sequences: 37544
Number of extensions: 145763
Number of successful extensions: 355
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -