Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C04
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 62 7e-11
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.59
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2... 27 1.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 1.8
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.4
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 5.5
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 5.5
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 26 5.5
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 7.2
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 25 9.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 9.5
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 9.5
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 25 9.5
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 25 9.5
>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 62.1 bits (144), Expect = 7e-11
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +1
Query: 85 SMNFAALKRADPYAREIVDSATHVALYTFE--ENEWEKTNIEGALFVYSRNGEPYHSLVI 258
++N LK P I+D A+HVA+Y F+ +W KT+IEG F+ ++ VI
Sbjct: 10 AVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLV-KDQRARVGYVI 68
Query: 259 MNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVKES 438
+NR + NL ++ + L + +L++R + G+W +D ++ R+ +VKES
Sbjct: 69 LNRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIF----NIVKES 124
Query: 439 I 441
+
Sbjct: 125 L 125
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.1 bits (62), Expect = 0.59
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 400 RVATKLNTLVKESIKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVTGN 579
R T KE+ + + T N+ + S S FS S ++D F+SN+ + +
Sbjct: 30 RTGTSFFMYQKEAFYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSS 89
Query: 580 KSES 591
S S
Sbjct: 90 LSRS 93
>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
L22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 448 SQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVTGNKSESTPAKAPDMTSQS 627
S G + +++ ++ S + DIFSML+ +DD SN+ + + P Q
Sbjct: 42 SNGSYLRESAQNPANLGSQKGSDIFSMLANQKDD--SNRQQKEERVKERPRSRISFKKQE 99
Query: 628 VMD 636
MD
Sbjct: 100 TMD 102
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -3
Query: 282 VVSVQPVHNH*TVVWFTISTVHKQSTLNVGFLPFVLFKCVKGNVGSTIDNFTSIWIC-PL 106
V S+ H H WF + + V F+P L+ K N+ + F ++ C PL
Sbjct: 113 VTSIPEEHRHLPSQWFPSNKIRTTKYTPVSFIPKNLWNQFK-NIANAFFLFVTLLQCIPL 171
Query: 105 *CSE 94
C E
Sbjct: 172 FCPE 175
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +1
Query: 265 RLNTNNLIEPVSKGIEL---QLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVKE 435
+L+T + E V+K E+ ++ EP L + +Y F + ++ T
Sbjct: 10 KLSTLDAWEMVNKNTEVVFDEIPEPETLSEMKRHPLYSNIFNADNNTTSFTEQIETSETS 69
Query: 436 SIKQSQGETMPQNSVYNSSTTSTQSID-IFSMLSKAQDDFNSNK 564
+ S+G + +N N S +SID + + + ++D S K
Sbjct: 70 KTQDSEGNKVDKNLKENKSIRRKRSIDNDYELSNVKRNDITSGK 113
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 112 ADPYAREIVDSATHVALYTFEENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNL 285
+D YA+ + D HVA YT NE + + +Y +SL +N N +L
Sbjct: 94 SDCYAKGMDDIMKHVATYTATMNERMNACHKEYIKMYEALASERNSLYKINEQNVQSL 151
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 388 DECVRVATKLNTLVKESIKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKG 567
DE + L+TLV + +K+S E PQ S+ +S +L Q +F G
Sbjct: 142 DEPPKALEVLHTLVAQKLKKSIEEVSPQKSI--KDLVGGKSTLQNEILGDLQKEF----G 195
Query: 568 VTGNKSESTP 597
T K E P
Sbjct: 196 ATPEKPEEVP 205
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 290 SIRLLVFSLFIITKLWYGS--PFLLYTNKAPSMLVFSHSF 177
SI L + S F++ K W S PFL+Y APS+ + F
Sbjct: 467 SILLSIISSFLV-KHWRESKVPFLVYFLSAPSLAILYSCF 505
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 335 KNGSFNCSSIPLDTGSIRLLVFSLFIITKLWYGSPFLLYTNKA 207
K G + ++P + FI T+ W G PFLL KA
Sbjct: 300 KPGYLDDETVPKGSRCPTYSAIPCFIDTERWRGVPFLLKAGKA 342
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +1
Query: 268 LNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVKES 438
L ++ E ++ + LQL + F+LY+N + + + EC T + E+
Sbjct: 447 LESSQFHETLNSELSLQLSDDFVLYKNTQEENAHLMLSMEKECANFYEYAKTAIYEN 503
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 247 CGMVHHFYCTQTKHPQCW 194
CG V FY +QT P+ W
Sbjct: 103 CGAVFAFYISQTPFPKGW 120
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 388 DECVRV-ATKLNTLVKESIKQSQGETMP-QNSVYNSSTTSTQSIDIFSMLSKAQDD 549
DE R+ A K L+++ K + + ++S+ +SST S+QS + ++ ++QDD
Sbjct: 126 DESARLWAEKRRFLLQKLGKDPNSKPIDYKSSMASSSTRSSQSSQVSAIQPQSQDD 181
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 278 LVFSLFIITKLWYGSPFL 225
+ F L + LWYGSP++
Sbjct: 195 ITFPLVTLEGLWYGSPYI 212
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 385 KDECVRVATKLNTLVKESIKQSQGETMPQNSVYNSSTT 498
++E V ++ K S+K+ GE PQ+S ++ T+
Sbjct: 244 EEETVDTVEEIADEEKHSVKEESGEASPQSSQQSTITS 281
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Frame = +1
Query: 424 LVKESIKQSQGETM------PQNSVYNSSTTSTQS 510
LVK+ ++ +G T PQNSVY S QS
Sbjct: 511 LVKKKVRDKKGSTQQLPTSSPQNSVYGSIKKDAQS 545
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 257 ITKLWYGSPFLLYTNKAPSMLV-FSHSFSSN 168
+TKL +G+ LL+TN P ++ + SF N
Sbjct: 92 LTKLLHGAVGLLFTNSKPDEVIGYFESFVQN 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.128 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,936
Number of Sequences: 5004
Number of extensions: 51543
Number of successful extensions: 141
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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