Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C04
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 116 2e-26
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278... 113 1e-25
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 112 3e-25
03_06_0595 - 34955345-34955464,34955495-34956256,34956384-349565... 65 4e-11
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 35 0.049
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 3.2
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 29 3.2
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 29 4.3
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495 29 4.3
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662... 28 5.6
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772... 28 5.6
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 7.5
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 27 9.9
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 27 9.9
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462... 27 9.9
01_06_1630 + 38753016-38753209,38753904-38754039,38754291-387544... 27 9.9
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 116 bits (278), Expect = 2e-26
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Frame = +1
Query: 64 MADTGLRSMNFAALKRADPYAREIVDSATHVALYTFEEN--EWEKTNIEGALFVYSRNGE 237
M + G R +N L+R DP +I+ +A HV LY F+ N +W + ++EG+LFV RN +
Sbjct: 17 MDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWSRKDVEGSLFVVKRNAQ 76
Query: 238 PYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKL 417
P V+MNR NT+NL+E + E QL+ P+++YRNA + GIWFY+ EC VA
Sbjct: 77 PRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVANLF 136
Query: 418 NTLVKESIKQSQGETMP 468
+ ++ K + P
Sbjct: 137 SRILNAFSKATPKPKAP 153
>12_01_0366 +
2779754-2779882,2780007-2780047,2780163-2780212,
2780824-2780968,2781298-2781354,2781448-2781571,
2781798-2782259,2782493-2782564
Length = 359
Score = 113 bits (272), Expect = 1e-25
Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Frame = +1
Query: 76 GLRSMNFAALKRADPYAREIVDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHS 249
G R +N L+R DP +I+ +A HV LY F E N+W + ++EG+LFV RN +P
Sbjct: 5 GTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIELNQWSRKDVEGSLFVVKRNKQPRFQ 64
Query: 250 LVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVA 408
++MNR NT+NL+E + E +L+ P+LLYRNA + GIWFY++ +C VA
Sbjct: 65 FIVMNRRNTDNLVEDLLSDFEFELQPPYLLYRNAAQEVNGIWFYNQQDCDAVA 117
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 112 bits (269), Expect = 3e-25
Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Frame = +1
Query: 76 GLRSMNFAALKRADPYAREIVDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHS 249
G R +N L+R DP +I+ +A HV LY F + N+W + ++EG+LFV RN +P
Sbjct: 5 GTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQ 64
Query: 250 LVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVAT 411
++MNR NT+NL+E + E +L+ P+LLYRNA + GIWFY++ +C VA+
Sbjct: 65 FIVMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVAS 118
>03_06_0595 -
34955345-34955464,34955495-34956256,34956384-34956507,
34957111-34957167,34958222-34958366,34958860-34958909,
34959366-34959514,34959955-34960146
Length = 532
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/68 (41%), Positives = 40/68 (58%)
Frame = +1
Query: 229 NGEPYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVA 408
N +P ++MNR NT NL E + G E Q++ P+++Y NA I GIWFYD EC +V
Sbjct: 115 NTQPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVG 174
Query: 409 TKLNTLVK 432
+ + K
Sbjct: 175 YLFSRIQK 182
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 76 GLRSMNFAALKRADPYAREIVDSATHVALYTFEEN 180
G R++N L+R DP +I+ A HV LY+F++N
Sbjct: 26 GTRTLNLTVLRRLDPAVADILIIAAHVVLYSFDDN 60
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 35.1 bits (77), Expect = 0.049
Identities = 29/104 (27%), Positives = 47/104 (45%)
Frame = +1
Query: 259 MNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVKES 438
+N L+ NNL+ KG P L ++K + D D+C ++ + VK +
Sbjct: 849 VNMLSVNNLLSQGDKGTTSAGSSP-LPEIDSKAKTENREVEDTDKCSHPPSRGDDGVKSN 907
Query: 439 IKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGV 570
KQ G + NS SSTTS + F++ K +D ++ V
Sbjct: 908 AKQPIGFKIDTNSNIKSSTTS-EYRSAFTVRGKVEDGCTTSSDV 950
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 397 VRVATKLNTLVKESIKQSQGETMPQNSVYNSSTTSTQSID-IFSMLSKAQDDFNSNKGVT 573
+R+A + S+ S + + +V + S+D + ++ S+ D S+ +
Sbjct: 1527 MRIAKAPRKQHQVSLHSSSSPNLNKGTVSLAEPAKKASLDSVMAVESRIIDPAESSVALK 1586
Query: 574 GNKSESTPAKAPDMTSQSVMDFFAK 648
G+K+ TP P + ++S +++AK
Sbjct: 1587 GDKASMTPIGQPLVNAESHTNYYAK 1611
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = -3
Query: 552 EIVLRFTQHAEDIYRLS*SCR------RIVN*ILWHGFALRLFYGLFH*CVQLRGHSHAL 391
EI++ ++ +D RLS + + IV HG L +F+G + G SH
Sbjct: 723 EIMIGYSDSGKDAGRLSAAWQLYKAQEEIVGVAERHGVKLTIFHGRGGTVGRGGGPSHLA 782
Query: 390 VLIIKPYTVNAALGVTI 340
+L P TVN +L VT+
Sbjct: 783 ILSQPPNTVNGSLRVTV 799
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 466 PQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVTGNKSESTPAKAPDMTSQSVMDFF 642
P N +Y+ + ++DI + + KGV G+ S P P S+ ++D++
Sbjct: 609 PDNIIYDEARWYIHNMDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDWY 667
>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
Length = 593
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 190 KTNIEGALFVYSR-NGEPYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIY 366
K I+G +F + + L I+ ++N +NL++ I + + +L+Y +
Sbjct: 317 KAYIDGEVFAVKKMKWDACEELKILQKVNHSNLVKLEGFCINSETGDCYLVYEYVENGSL 376
Query: 367 GIWFYDKDECVRV 405
+W D+D R+
Sbjct: 377 DLWLMDRDRARRL 389
>04_04_1225 -
31865556-31865590,31865687-31865734,31866179-31866262,
31866336-31866395,31866589-31866642,31866747-31867710
Length = 414
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +1
Query: 415 LNTLVKESIKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVTGNKSEST 594
LN V ++IK+S G N+ + T + + + + + +KG +KSE++
Sbjct: 327 LNVPVMDAIKESLGPKEQPNATNSKQQTFMEPPESTEQAVQLDTERDISKGADDSKSEAS 386
Query: 595 PAKAPDMTSQSVM 633
AP + + + +
Sbjct: 387 GGTAPPVEASTAV 399
>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
7724751-7725072,7725183-7725661,7726157-7726430,
7726598-7726884,7726966-7727388,7727545-7727890,
7728011-7728328,7729817-7731081
Length = 1803
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 246 VVWFTISTVHKQSTLN-VGFLPFVLFKCVKGNVGST 142
++ FT S +K +LN +GFL F K +G++GS+
Sbjct: 1285 LIAFTNSRFNKDISLNAIGFLRFCAAKLAEGDIGSS 1320
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 454 GETMPQNSVYNSSTTSTQSI---DIFSMLSKAQDDFNSNKGVTGNKSESTPAKAPDMTSQ 624
GET+P NS NS T ++ I + +S + + NK G+ +++ P + D S+
Sbjct: 4263 GETVPSNSQENSEGTPSEEISKQQPQTNMSSTKLSKDDNKEADGSANDTKPGDSEDNPSR 4322
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 220 TQTKHPQCWFSPIRSLQMCKGQRG*HYRQFHEHMD 116
+Q + P W SP L + KGQR R + MD
Sbjct: 697 SQPEEPGTWASPQEELNVAKGQRSKRKRPSLDKMD 731
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 466 PQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVTGNKSESTPAKAPDMTSQSVMDFF 642
P N +Y+ + ++DI + + KGV G+ S P P S+ ++D +
Sbjct: 418 PDNIIYDEARWYIHNMDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDCY 476
>05_01_0536 -
4622767-4622865,4623550-4623673,4624571-4624685,
4624784-4625028,4625081-4625316
Length = 272
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 454 GETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVTGNKSESTPAKAPDM 615
G + +S +SS++S+ S S DD ++ G T +S +P PDM
Sbjct: 31 GSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPDNRLGSTATESPPSPKLQPDM 84
>01_06_1630 +
38753016-38753209,38753904-38754039,38754291-38754404,
38755053-38755112,38755223-38755252,38755523-38756206
Length = 405
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 475 NSVAWFRLATVLWTLSLMCSTSWPLARTRPYHKTIYRKCGTWRY 344
N A+FR + TLS + + WP A R T + W+Y
Sbjct: 3 NGTAFFRFSAKRLTLSRLMLSGWPAASPR-LQSTSMQSSHPWQY 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.128 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,791,460
Number of Sequences: 37544
Number of extensions: 296279
Number of successful extensions: 723
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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