Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C04
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.8  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    24   4.8  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    23   8.4  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = -3

Query: 309 NSFRHWFY*VVSVQPVHNH*TVVWFTISTVHKQSTLNVGFLPFVLFKCVKGNVGSTIDNF 130
           N+  H+   +++   V+N+  V+W   +      +++V + P+ +  CV      T D F
Sbjct: 119 NADGHYEVTLMTKATVYNNGMVIWQPPAVYKSSCSIDVEYFPYDVQTCVLKLGSWTYDGF 178


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 189 LPFVLFKCVKGNVGSTIDNFTS 124
           L  V ++ + GNV + ++NFT+
Sbjct: 7   LSTVTYELISGNVSAALENFTA 28


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 264 VHNH*TVVWFTISTVHKQSTLNVGFLPFVLFKCVKGNVGS-TIDNF 130
           V++   V+W   +  H    LN+   PF   KC+   +GS T D +
Sbjct: 144 VYSEGKVLWVPPTEYHAFCELNMRLWPFDYQKCIV-KIGSWTFDGY 188


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.315    0.128    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,711
Number of Sequences: 2352
Number of extensions: 12963
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)