Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C04
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    73   2e-13
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40797-12|AAN84858.1|  230|Caenorhabditis elegans Gex interactin...    27   8.8  
U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interactin...    27   8.8  
U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interactin...    27   8.8  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    27   8.8  

>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
 Frame = +1

Query: 79  LRSMNFAALKRADPYAREIVDSATHVALYTFE--ENEWEKTNIEGALFVYSRNGEPYHSL 252
           L + N A L++ D  A +I+D     A+Y  +    EW ++N EG  FVY R   PY S 
Sbjct: 12  LAAKNLAQLQKIDIAASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFVYQRADRPYFSF 71

Query: 253 VIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVK 432
           +I NR + ++ IEP++    L+    F+ +      I  +WF+  D+    A K+  L++
Sbjct: 72  LIANRNDPSDFIEPLTLNHILRHDGNFIYFYKDLASIQALWFHQIDD----AQKIYNLLQ 127

Query: 433 ESIKQSQGETMPQNSVYNSSTTSTQS 510
           + + + +G T  Q     +++ + Q+
Sbjct: 128 KLVNRLKGSTTEQARAAKAASEAPQA 153


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +1

Query: 445 QSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVTGNKSESTPAKAPDMT-- 618
           QS  E +P+ +++++S       DIF ++S           V GN ++ +P +  +M+  
Sbjct: 314 QSIVENLPKLNIHDASCRFQICDDIFEIVSAHYHVIREMIQVVGNINDYSPIRLNEMSFT 373

Query: 619 -SQSVMDFFAK 648
            SQS   F+AK
Sbjct: 374 GSQSAPQFYAK 384


>U40797-12|AAN84858.1|  230|Caenorhabditis elegans Gex interacting
           protein protein9, isoform c protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 197 LVFSHSFSSNV*RATWVALSTISRAYGSARFNAAKFILRNPVSAIF 60
           L ++    S + RATW  L ++S  +G  RFN +   L N   A+F
Sbjct: 173 LAWATIICSRLSRATWFELDSLSDLFGLVRFNPS---LLNAGRAVF 215


>U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interacting
           protein protein9, isoform b protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 197 LVFSHSFSSNV*RATWVALSTISRAYGSARFNAAKFILRNPVSAIF 60
           L ++    S + RATW  L ++S  +G  RFN +   L N   A+F
Sbjct: 256 LAWATIICSRLSRATWFELDSLSDLFGLVRFNPS---LLNAGRAVF 298


>U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interacting
           protein protein9, isoform a protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 197 LVFSHSFSSNV*RATWVALSTISRAYGSARFNAAKFILRNPVSAIF 60
           L ++    S + RATW  L ++S  +G  RFN +   L N   A+F
Sbjct: 560 LAWATIICSRLSRATWFELDSLSDLFGLVRFNPS---LLNAGRAVF 602


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
 Frame = +1

Query: 172 EENEWEKTNIEGALFVYSRNG-EPYHSLVIMNRLNTNNLIEPV--------SKGIELQLK 324
           E  +W K +   A+ ++ +N  E Y+ +++M   + +   EP          K  E   +
Sbjct: 40  ENAQWRKPDEGAAVALFLKNSTERYYRIIVMEP-SADPDWEPTVQFDFLIRDKKFETMQE 98

Query: 325 EPFLLYRNAKCRIYGIWFYDKDEC 396
              LL   A+ R  G+ FYD  EC
Sbjct: 99  HARLLVFEAESRYIGLNFYDSKEC 122


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = -2

Query: 424 MCSTSWPLART---RPYHKTIYRKCGTWRYDIV 335
           M    WP  RT   RPY +  YR  G W   +V
Sbjct: 96  MMQIRWPKYRTHCRRPYPEMAYRALGNWARQVV 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.128    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,007
Number of Sequences: 27780
Number of extensions: 286243
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)