Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_C02
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 110 1e-25
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 38 9e-04
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 31 0.17
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 0.40
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.53
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 28 1.2
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.0
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.0
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 6.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.6
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 6.6
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.7
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 110 bits (265), Expect = 1e-25
Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 1/161 (0%)
Frame = +1
Query: 136 QILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNH 315
+ L +T+SPD N A + L++AA T+F ++ +L+ L + RMAAGL LKN
Sbjct: 5 EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLALKNA 64
Query: 316 LTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIG-TENSRPSSAAQCVAYVAVAELPV 492
+T+++ K +YQQ W +L +++ +K L +G +E+ SAAQ VA +A EL
Sbjct: 65 ITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELAT 124
Query: 493 GQWNDLIPILVXNVVHVQSTELKKEATLEAIGYICXDIDAE 615
QW DL+ LV NV Q + LK+ +L+ IGYIC + E
Sbjct: 125 NQWPDLMVTLVANVGEGQPSALKQH-SLQTIGYICESVSPE 164
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 38.3 bits (85), Expect = 9e-04
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Frame = +1
Query: 106 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVAR 285
M A+ TL L Q+L ++++PD ++ A R L+ + + + ++ N QV +
Sbjct: 1 MDAQFTLELTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFH-IMGTCENPQVRQ 59
Query: 286 MAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAI--GTENSRPSSAAQC 459
+AA ++ + L +Y W ++ DV+ I+ N+L E+ + +
Sbjct: 60 LAA-IEARK--------LCHKY---WSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRV 107
Query: 460 VAYVAVAELPVGQWNDLIPILV 525
+A +A +LP G+WN+L LV
Sbjct: 108 IAALAKLDLPEGKWNELSAFLV 129
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 298 LQLKNHLTSKDP--TLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYV 471
LQ+K ++ P TL+ ++ W + D ++++ + P +C+ Y+
Sbjct: 25 LQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKDSPERRLECLYYI 84
Query: 472 AVAELPVGQWND 507
A++ + Q+ +
Sbjct: 85 ALSHYKLKQYEE 96
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.5 bits (63), Expect = 0.40
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 187 VRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWL 366
++Y++ A T + + LL GG+ +A++ + K HL S D TL+ +
Sbjct: 191 LKYVESLAVALRTESVTWVRYFLLMGGHIVLAKILQAIHEKKHLKSPDITLE-------I 243
Query: 367 ALAEDVRLYIKENILAAIGTENSRP-SSAAQCV 462
A+ + +R I + I N P S C+
Sbjct: 244 AILKSMRCIIGQKIGTDFYLSNKYPIDSVVHCL 276
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 112 AETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMA 291
A T + I +L ++ + LEA Y+ TNF K + +++ S V+ M
Sbjct: 266 ASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKLAKASNSMIVPASTSDVSGMV 325
Query: 292 A 294
A
Sbjct: 326 A 326
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/48 (27%), Positives = 31/48 (64%)
Frame = +2
Query: 53 KNRIESVFCNINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDT 196
++++E+ N N +++K+ +++Q R YK + ++ IE+N Q+D+
Sbjct: 742 RSKLEAYHINCN-KVIKEFSKRQTAR-YKIIEKELAQIEVNLVSQIDS 787
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 88 LKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDH 204
+KN + H +T L + IL++ D + +RYL H
Sbjct: 549 IKNRQKFHGQT-LVEVGILKRLCEADPADKNNVIRYLSH 586
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 191 LTAASNSFRSGETVFSSICISVNVVSACI 105
LTA + S +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 279 HLTVTTLEKDIGQHFDECCEICGGSMVEV 193
+L TT++K FD ++CGG+ + +
Sbjct: 627 YLLNTTVKKQFSAFFDGFMKVCGGNAISL 655
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 396 YIKSNIFCQSQPSLLILLFKCRIFRSEMIFQLQTSCHPSHLTVTTLEKDIGQ 241
YI N F + +LLF +F +F +Q H +H T L+K G+
Sbjct: 11 YIDINFFRNATLDQCLLLFYLSLFSLTNLFLIQKLFHANH-TQHPLKKYFGE 61
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 533 LFMSNLLNSKRKRLWR 580
+F+ N+L KR++LWR
Sbjct: 239 VFVENVLTKKRRKLWR 254
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 351 STKMAGFGRRCSTLYKRKYISCYRNRE 431
S K+AG S + ++Y++ YR E
Sbjct: 110 SQKLAGLSHSTSDYFSKEYLTAYRRSE 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,017
Number of Sequences: 5004
Number of extensions: 42178
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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