Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_B19
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 112 1e-25
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 112 1e-25
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.56
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.3
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 6.9
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 6.9
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 6.9
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 112 bits (269), Expect = 1e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 362
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 363 LRFNTRVRFEERYKSGKNKWFFQKLRF 443
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 89.4 bits (212), Expect = 1e-18
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +2
Query: 41 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPR*SAQEDGKE 220
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 112 bits (269), Expect = 1e-25
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 362
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 363 LRFNTRVRFEERYKSGKNKWFFQKLRF 443
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 89.4 bits (212), Expect = 1e-18
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +2
Query: 41 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPR*SAQEDGKE 220
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 30.7 bits (66), Expect = 0.56
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 71 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPR*SAQEDGKE*NPQEVQDKA 250
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMYM--AAHVDN---SPAQVQSIT 230
Query: 251 FRQGCKL 271
RQG L
Sbjct: 231 IRQGNSL 237
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 30.7 bits (66), Expect = 0.56
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 71 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPR*SAQEDGKE*NPQEVQDKA 250
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMYM--AAHVDN---SPAQVQSIT 230
Query: 251 FRQGCKL 271
RQG L
Sbjct: 231 IRQGNSL 237
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 30.7 bits (66), Expect = 0.56
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 71 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPR*SAQEDGKE*NPQEVQDKA 250
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMYM--AAHVDN---SPAQVQSIT 230
Query: 251 FRQGCKL 271
RQG L
Sbjct: 231 IRQGNSL 237
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 47 KIMKPGKVVLVLSGRYAGRKAIVVK 121
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 107 PCDPRTGHLRPALLYPASLSYPSWRDIPFTR*H 9
P D TGH RPAL P PS + +P + H
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS-QSVPKAQAH 581
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 297 YNVLASSDCSLQP*RKALS-WTSCGFY-SFPSSCALYRGYLSIPAT 166
Y + C++ P + W +C F+ + P SC L G ++ PAT
Sbjct: 92 YQKICPKTCNVCPPAICVDQWDNCPFFKNCPLSCGLCTGNVTTPAT 137
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 192 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
G+ H N+ KR KI + YNHL+P T+D+S K
Sbjct: 391 GQNHVATHLNRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 219 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 219 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
NK KR KI K YNHL+P T+D+S K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 219 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,649,587
Number of Sequences: 27780
Number of extensions: 218102
Number of successful extensions: 695
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -