Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_B16
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 68 1e-12
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.25
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.0
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 2.4
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 26 5.5
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.2
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 7.2
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 25 7.2
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 25 7.2
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.5
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 25 9.5
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 9.5
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 67.7 bits (158), Expect = 1e-12
Identities = 44/175 (25%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Frame = +2
Query: 143 LSAEGKTPEYMALAGIKFKLSLPEFKDNIQLK-EQLLNGIKAGHMAPYYKEVCNDLGWA- 316
++ + +T + ++ F+LS P ++ Q + L + I+ +AP YK + + +
Sbjct: 13 MTEKARTVSDLTISQAIFELSSPFLENKSQKALDTLFSAIRDHDLAPLYKYLSENPKTSA 72
Query: 317 ---FDQKLYDDMTKENQDRLSKFE---EDDSET-------PVWQDRLDYLCSVGDKETAT 457
FD + M K+N+++L++F+ ED E +++ DY ++ D+E
Sbjct: 73 SIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGV 132
Query: 458 ALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGGDW 622
L +E +TLT ++D +F+ R+AY + +++ +G+ + K L++KGGDW
Sbjct: 133 QLCDETFERATLT-GMKIDVLFSKIRLAYVYA-DMRVVGQLLEKLKPLIEKGGDW 185
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.25
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = +2
Query: 125 NQLKMELSAEGKTPEYMALAG-IKFKLSLPEFKDNIQL---KEQLLNGIKAGHMAPYYKE 292
N LK + E E + G ++ K L +N++ K + L +A A KE
Sbjct: 115 NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKE 174
Query: 293 VCNDLGWAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETA 454
C + W QKLY DM +EN + K E Q LD+ E+A
Sbjct: 175 EC-EKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQ--LDHDLQASQNESA 225
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 1.0
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Frame = +2
Query: 137 MELSAEGKTPEYMALAGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAPYYKEVCNDL--- 307
+ LS++ K+ A FK L F+ + +L E+L N +P Y+ +
Sbjct: 521 VSLSSQNKSAP-TAKKNNSFKPKL--FRRSRELSEKLCNNWSERVKSPSYQLKVREREKL 577
Query: 308 -GWAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYED 484
W +K+ D + +S T V Q LD+ S G+K+ T + T
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQP--- 634
Query: 485 STLTTNRRLDAIFALFRIAYFHGCNV-KEMGKAIN 586
RR+ AI R+A+ V KE+G +++
Sbjct: 635 ------RRISAISLAERVAFERDTTVGKEVGYSVH 663
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 150 RREKHLNTWHWPESNLNSVYL 212
R E +TW WP N NSV L
Sbjct: 275 RDEIGSSTWSWPSQNCNSVLL 295
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 281 YYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEEDDS 391
Y K++ N L DQ+ D ++E SKFE DDS
Sbjct: 991 YVKDMKNPLA---DQRASLDESRETTTASSKFESDDS 1024
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 335 DDMTKENQDRLSKFEEDDSETPVWQDRLDY-LCSVGDKETAT 457
D+ +NQ ++E++D+ + ++D LDY VG+ ++ T
Sbjct: 1932 DEEDLDNQGEEFEWEDEDNASSGYEDELDYNEDEVGENDSTT 1973
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 143 LSAEGKTPEYMAL-AGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAP 280
+S +GK E +AL G+ LSL EF+ + L E L + I A + P
Sbjct: 229 VSIDGKEFERVALNEGVSVTLSLREFRAAVILAEALGSSICAYYGVP 275
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 221 DNIQLKEQLLNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDM 343
+N Q+ + +N I+ M YY E +A D+ LYD++
Sbjct: 180 ENSQISPEAVNDIQEDIM--YYVECSQSEDFAEDENLYDEL 218
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 335 DDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVG 439
D N +S EEDDS+ V D+L+ SVG
Sbjct: 95 DHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVG 129
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 290 LYNKEPCVQPLFHSITAP 237
LY + PC+ PL+H+ P
Sbjct: 11 LYRENPCLLPLYHATRDP 28
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 100 IKVCLEVNFQQIISLLTEQTKNKIKMHSTSAT 5
I C E +Q ISLL T+N M ++S T
Sbjct: 258 ILTCPEEQLEQKISLLLSSTRNSPTMSNSSLT 289
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 386 DSETPVWQDRLDYLCSVGDKETATALA 466
D P++Q LDY + GD A AL+
Sbjct: 542 DEAKPIYQKWLDYESNYGDLNAAIALS 568
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +3
Query: 393 KHPFGKIGLITCVQ--LETKKQL 455
+HP+G +G + CV+ E +KQL
Sbjct: 164 EHPYGGLGFVGCVEEIYEQEKQL 186
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 278 PYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFE 379
P E D+ W+F ++ K+ Q LSKF+
Sbjct: 137 PMTAETLGDISWSFSRRENMKFEKDQQYILSKFK 170
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 311 WAFDQKLYDDMTKENQDRLSKFEEDD 388
W D +LY+ +E ++ LSK +DD
Sbjct: 290 WKVDFRLYEVFCEETKNDLSKLLKDD 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,642
Number of Sequences: 5004
Number of extensions: 47805
Number of successful extensions: 157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -