Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_B14
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    30   0.25 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.77 
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   1.8  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   2.4  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   3.1  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   5.5  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   9.5  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 228 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 362
           ++DYA K     L      +  DDDL+++S  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 21/90 (23%), Positives = 36/90 (40%)
 Frame = +3

Query: 279 QDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGP 458
           +  T   DLL+V +++   D +NA       ++     + R  +        PEN+    
Sbjct: 550 EQETIPSDLLKVRKDLL--DDSNAAKDTMDKVKKHLKSLLRVGDTARKEFTWPENMPKPC 607

Query: 459 TIRPFVALFDNYHKNVIRPEFVTPNEETEQ 548
            +   V     YH+ V+R  F+    E EQ
Sbjct: 608 EVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 419 EFIKRS*EC-MERTNNKTFCCTIRQLSQECDQTRVCYAE*RNGTNH-LHQH 565
           E  K   +C  +R  + T CC IR ++ +CD          N T H +H+H
Sbjct: 28  ELNKNPKDCNSKRKRSVTECCEIRLITSKCDFESTQQLVHHNCTGHKVHEH 78


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 224 TNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLARSL 108
           TN C+   ++   CV L   H+IA + G+D + DL R L
Sbjct: 135 TNPCSPDEKNQNDCVDLKV-HLIAKEDGRDAIIDLTRGL 172


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +3

Query: 318 EEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTI-RPFVALFDNY 494
           E+ F  D +   N I    Q +  P +     + + L  P +  +       F   F+N 
Sbjct: 178 EDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNE 237

Query: 495 HKNVIRPEFVTPNEETEQTTYINTILATGP 584
            +++ R +  +PN   ++  YI++ ++  P
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTISYQP 267


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 276 AQDSTTDDDLLRVSEEMFNADI 341
           AQD   DDD+  + EE+F+ D+
Sbjct: 33  AQDDEPDDDIDALIEELFSEDV 54


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 540 TEQTTYINTIL---ATGPIRSLITFLVNKGITQLNEY 641
           TE+   +  +L   A GP+ S++TF  NK +++L EY
Sbjct: 377 TEKPVIVGLLLFSDALGPLSSILTFASNK-VSRLCEY 412


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 84  PPRKTKKINVIFIFD*CV*SSAVPAH 7
           P RK  ++ ++F+F   + +S VPAH
Sbjct: 149 PSRKVGQLQILFLFKDHMNTSIVPAH 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,892
Number of Sequences: 5004
Number of extensions: 51548
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)