Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_B13
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   5.5  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   7.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.5  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 253 NVPSSSLELIHHGKILKDKATLQECG 330
           N+P S  E + H K + D    +ECG
Sbjct: 194 NMPQSDEEAVKHYKFISDHLFEEECG 219


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 281 INSNDDDGTLDRFSASVLRESTVFSSPKFSSL*RSIGPGFTFI--PKNMH 138
           I +N+  GTL R  A +      ++  KF+S  R +   +T+I  PKNM+
Sbjct: 166 IVTNEGFGTLYRGLAPLWFRQIPYTMMKFASFERIVEALYTYIGKPKNMY 215


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 62  LEFIASLIIYRV-ILKGNLNKKWITSHAYFWV*K*NLDQ 175
           L+ +AS+ +Y+  I KG +N K   SH Y +    N+D+
Sbjct: 309 LDLLASIGVYQPHIAKGRVNGKRTLSHMYEFTSTINVDE 347


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 460 NAPGWTRAMQVITPFILSFXIYXNEWRSY 546
           N P W+R ++ I P +L        W  +
Sbjct: 296 NIPAWSRTIETIYPVVLKMCTKTKYWNVF 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,290
Number of Sequences: 5004
Number of extensions: 50934
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)