Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_B13
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 35 0.065
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 32 0.35
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 31 1.1
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 29 2.4
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 29 3.2
04_03_0197 - 12547382-12547450,12547955-12548231,12549031-12549137 29 4.3
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 29 4.3
03_04_0139 + 17630316-17630451,17632328-17632354,17632970-176331... 27 9.9
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 27 9.9
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 34.7 bits (76), Expect = 0.065
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 205 LENTVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVKS 339
L+ TV + + +VP++ LI+ G+ILKD+ TL+ GV++
Sbjct: 48 LDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVET 92
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 217 VDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQE 324
V + E + + + P LIH+GK+LKD++TL+E
Sbjct: 83 VKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLEE 118
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 214 TVDSLRTEAEKRSNVPSSSLELIHHGKILKDKATLQECGVKS 339
+V + + + +VP+ LI+ G+ILKD+ TL GV++
Sbjct: 748 SVGAFKAIVAESCDVPAPQQRLIYKGRILKDEQTLASYGVET 789
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 235 EAEKRSNV-PSSSLELIHHGKILKDKATLQ 321
E+ + NV P+ LIH GKILKD TL+
Sbjct: 31 ESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 259 PSSSLELIHHGKILKDKATLQE 324
P+ LIH GK+LKD TL E
Sbjct: 40 PAEQQMLIHQGKVLKDDTTLDE 61
>04_03_0197 - 12547382-12547450,12547955-12548231,12549031-12549137
Length = 150
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 510 QYKWCNDLHSSSPTWCIW 457
Q +WCND S++ WC W
Sbjct: 65 QRQWCNDGWSTTRRWCQW 82
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 576 ETTVRNPGELIASPLIXINTK*QYKWCNDLHSSS 475
E+T ++ GEL+ S + K Q+KW H+ S
Sbjct: 199 ESTEKDEGELVVSKIFYELEKNQFKWAEKSHAQS 232
>03_04_0139 +
17630316-17630451,17632328-17632354,17632970-17633140,
17633222-17633277
Length = 129
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 235 EAEKRSNVPS-SSLELIHHGKILKDKATLQEC 327
EA+K + + L+LI+ GKIL++ TL EC
Sbjct: 54 EADKEKGPRTVNDLKLINAGKILENNKTLSEC 85
>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 148 LGIKVKPGPIERHKLENFGLENTVDSLRTEAEKRSNVPSSSLELIHHGKILKDK 309
L K KP +H+ +EN V L +EK+++ L L+ H K K K
Sbjct: 1032 LPFKSKPKDTPKHR--KTPVENRVPVLMQPSEKKTHAAIQQLRLLKHEKARKKK 1083
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,581,787
Number of Sequences: 37544
Number of extensions: 314894
Number of successful extensions: 701
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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