Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_B10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    27   3.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.1  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    26   4.1  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.5  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    25   7.2  

>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 21  PNYYHFLFRISKFPKHKNKIFFLVIYACSDN 113
           P+YY  L RI+++P    ++   ++Y  +DN
Sbjct: 353 PSYYTNLNRIARYPIENIRLPITLVYGSNDN 383


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 262 LCYTIRPTVSLRKAAGKTNNKKNRTY 339
           L YT +P  S+ K     NN KN+TY
Sbjct: 543 LPYTYQPFSSVEKIETPPNNSKNQTY 568


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 543 VIRVFCEIKDLWYWKFSCLSFKIMFRTLICYS 638
           ++ V C IK++ YW   CL + + F  LI Y+
Sbjct: 17  MVNVQCRIKEIMYWNI-CLYWDV-FSKLIIYN 46


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -3

Query: 217 TFMITQMTIQHIKFFLNTI----ATAEFTN*ILHRLDRL 113
           TF++T  T++ I FF++TI    A+ E T  +   LD L
Sbjct: 63  TFLVTNFTLRGIDFFVDTIVGFPASPETTFKVFSLLDSL 101


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 628 IRVRNIILKLRHENFQYHKSLISQKTRITDKSQLNIANIRLHYYL 494
           + V NI   L+H+N +  KSL S  T    +   +  + R HY L
Sbjct: 456 LHVVNIFF-LKHQNSKKQKSLASSSTIDLSEQPKDDKDARFHYIL 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,966
Number of Sequences: 5004
Number of extensions: 48275
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)