Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_B09
(654 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and... 286 3e-76
UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and... 270 2e-71
UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa s... 158 1e-37
UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2; ... 138 8e-32
UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1; ... 126 4e-28
UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (R... 124 2e-27
UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase... 122 1e-26
UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa ... 120 2e-26
UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and... 118 2e-25
UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and... 115 9e-25
UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1... 109 4e-23
UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa s... 104 2e-21
UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa s... 99 5e-20
UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa ... 94 2e-18
UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain ... 93 7e-18
UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA polym... 87 3e-16
UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain ... 83 6e-15
UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like prote... 79 9e-14
UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2; ... 78 2e-13
UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep: Tcc... 75 1e-12
UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA polym... 71 2e-11
UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 69 7e-11
UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1; Bige... 64 4e-09
UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113, w... 57 4e-07
UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia intesti... 54 3e-06
UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1; Arabi... 51 3e-05
UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putati... 47 5e-04
UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella... 46 8e-04
UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putativ... 42 0.013
UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain ... 40 0.069
UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain ... 38 0.21
UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia intest... 37 0.49
UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putativ... 36 0.64
UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2; ... 35 2.0
UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2; ... 34 3.4
UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Re... 34 3.4
UniRef50_P15740 Cluster: DNA-directed RNA polymerase subunit H; ... 34 3.4
UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:... 34 3.4
UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in chr... 33 7.9
UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance pro... 33 7.9
>UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=16; Eumetazoa|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Homo
sapiens (Human)
Length = 210
Score = 286 bits (702), Expect = 3e-76
Identities = 131/161 (81%), Positives = 146/161 (90%)
Frame = +2
Query: 116 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 295
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK Q GDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV 60
Query: 296 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 475
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 476 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLA 598
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLA 161
Score = 38.3 bits (85), Expect = 0.16
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 592 LGRYKLKENMLMRIQAGDPVA 654
L RYKL+EN L RIQAGDPVA
Sbjct: 160 LARYKLRENQLPRIQAGDPVA 180
>UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=32; Eukaryota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Caenorhabditis elegans
Length = 211
Score = 270 bits (662), Expect = 2e-71
Identities = 121/160 (75%), Positives = 143/160 (89%)
Frame = +2
Query: 119 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 298
DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 299 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 478
VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122
Query: 479 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLA 598
APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLA
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLA 162
Score = 33.9 bits (74), Expect = 3.4
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 580 KARTLGRYKLKENMLMRIQAGDPVA 654
KA L RYKLK++ L RIQ DPVA
Sbjct: 157 KAELLARYKLKDSQLPRIQQCDPVA 181
>UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=2; Arabidopsis thaliana|Rep: RNA polymerase
I, II and III 24.3 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 205
Score = 158 bits (383), Expect = 1e-37
Identities = 76/165 (46%), Positives = 111/165 (67%)
Frame = +2
Query: 125 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 304
+ E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 58
Query: 305 HNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAP 484
+D +DQ+++FFPDEAK+G+KT+K Y RM+ EN+ RAI+VVQ ++P A+ + +++
Sbjct: 59 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS 118
Query: 485 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLADIS*KRT 619
K+ LE F E+E+L+NI EH LVPEH VLT +EK+ LL + K T
Sbjct: 119 KFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKET 163
>UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 227
Score = 138 bits (335), Expect = 8e-32
Identities = 72/160 (45%), Positives = 103/160 (64%)
Frame = +2
Query: 140 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 319
+L RIR+TVMQ+ DRGYLV + EL F ++G+ R DL++ +DP
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDP 68
Query: 320 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 499
+DQ++VFFP++ K+G+K IK Y M+ EN+ RA++V+Q ++P A+ L ++ PK LE
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128
Query: 500 QFLESELLINITEHELVPEHIVLTPDEKQELLADIS*KRT 619
F E+ELLINI EH LVPEH VL +EK+ LL + K T
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKET 168
>UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 554
Score = 126 bits (305), Expect = 4e-28
Identities = 60/160 (37%), Positives = 97/160 (60%)
Frame = +2
Query: 116 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 295
M+DD ET +LWR+ +T+ +L DRGY V DE+ LE FK ++ P+ R+ L
Sbjct: 1 MEDDRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYA--PTGGSVDRNKLNF 58
Query: 296 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 475
H + ++FVF+ + +G+KT++ + + M+E +I R I++ M+ +A++ +
Sbjct: 59 FTEHGEHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDA 118
Query: 476 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
M + LE F E+ LL+NIT H LVP+H L P+EK+ELL
Sbjct: 119 MRGTFHLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELL 158
>UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (RPB5
homologue), putative; n=11; Aconoidasida|Rep:
DNA-directed RNA polymerase, subunit (RPB5 homologue),
putative - Theileria annulata
Length = 205
Score = 124 bits (298), Expect = 2e-27
Identities = 63/158 (39%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Frame = +2
Query: 125 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 304
D E +L+R R+T ++ DRGY + E +T +FK ++ + +K RS ++++ +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARY--EMYDK--VRSKMLLVAS 57
Query: 305 HNDDPTDQMFVFFPDEAK-IGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMA 481
+++ V+F DE K G+K I+ RM++ +IHRAI+V Q ++P AK ++++
Sbjct: 58 LRTAAENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAY 117
Query: 482 PKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
PK I+E F+E+ELL+NIT+HELVP+HI LT +EKQ LL
Sbjct: 118 PKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLL 155
>UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase
(RNA) II (DNA directed) polypeptide E, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
Polymerase (RNA) II (DNA directed) polypeptide E,
partial - Ornithorhynchus anatinus
Length = 157
Score = 122 bits (293), Expect = 1e-26
Identities = 55/66 (83%), Positives = 57/66 (86%)
Frame = +2
Query: 155 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 334
R QLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL VLVAHNDDPTDQMF
Sbjct: 46 RNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 105
Query: 335 VFFPDE 352
VFFP E
Sbjct: 106 VFFPGE 111
>UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 221
Score = 120 bits (290), Expect = 2e-26
Identities = 62/172 (36%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Frame = +2
Query: 131 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPS---------EKRPARS 283
E +LWR+ +TV ++ DRGYL+ E++ + E+FK++ G S +K +RS
Sbjct: 8 ELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSSSRS 67
Query: 284 DLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 463
++ H +D TD++FV+F + + ++KT+ M + R I++ MSP+AK+
Sbjct: 68 NMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKK 127
Query: 464 SLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLADIS*KRT 619
+L +M +Y LE F ES+LL+NIT+H LVP+H V+ P+EK L+ K T
Sbjct: 128 TLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKET 179
>UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=14; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Ashbya
gossypii (Yeast) (Eremothecium gossypii)
Length = 215
Score = 118 bits (283), Expect = 2e-25
Identities = 66/171 (38%), Positives = 104/171 (60%), Gaps = 10/171 (5%)
Frame = +2
Query: 113 NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 292
+ D++ +LWR +TV ++ DRGY +TQ+E+D +LE FK ++ D S RP R
Sbjct: 2 DQDNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK--- 56
Query: 293 VLVAHNDDPTDQ----------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAG 442
+++ +PT++ ++V F DE +GIKT+K + + E+N I + Q G
Sbjct: 57 -MMSFQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNG 115
Query: 443 MSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
++PSA + L +AP I E F E+ L++NIT HELVP+HI L+ +EK+ELL
Sbjct: 116 ITPSALKLLPSVAPATI-ETFNETALVVNITHHELVPKHIKLSDEEKKELL 165
>UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=13; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 215
Score = 115 bits (277), Expect = 9e-25
Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)
Frame = +2
Query: 113 NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 292
+ +++ +LWR +TV ++ DRGY +TQ+E++ LE FK ++ D S RP R +
Sbjct: 2 DQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRKMMS 59
Query: 293 VLVAHNDDPTDQ------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPS 454
++ + ++V F DE +G+KT+KT+ +QE+N I V Q ++PS
Sbjct: 60 FQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPS 119
Query: 455 AKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
A + LV P +E F E+ L++NIT HELVP+HI L+ DEK+ELL
Sbjct: 120 AMK-LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELL 165
>UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase
subunit Rpb5 - Entamoeba histolytica HM-1:IMSS
Length = 204
Score = 109 bits (263), Expect = 4e-23
Identities = 58/160 (36%), Positives = 96/160 (60%)
Frame = +2
Query: 116 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 295
M+ Y+ W KTV+++ DRGY+ ++++ + TLE FKE+F K E + +L +
Sbjct: 1 MESVTHIYRAW---KTVLEMLRDRGYITSEEDHNTTLEGFKERFY-KGGEGVDHK-ELTI 55
Query: 296 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 475
V +D TD + VFF + + + Y T ++ E++ RAI+V + +S KQ +++
Sbjct: 56 KVVKENDATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MME 114
Query: 476 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
+ E LE EL++N+T H LVP+HI+L+P+EKQELL
Sbjct: 115 QPREVKWEALLEDELIVNVTHHILVPQHILLSPEEKQELL 154
>UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit-like protein; n=1; Arabidopsis thaliana|Rep: RNA
polymerase I, II and III 24.3 kDa subunit-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 210
Score = 104 bits (249), Expect = 2e-21
Identities = 51/160 (31%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Frame = +2
Query: 119 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 298
D D E +++++R+TV+Q+ DRGY + + +L+ E+F ++F ++ + L V
Sbjct: 3 DMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVN--KEALFVS 60
Query: 299 VAHNDDPTDQMFVFFPDEAKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 475
+P D+++VF+P+ K+G+ IK +M+++ +HR IVVV ++ A+ ++ +
Sbjct: 61 ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120
Query: 476 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
+ +E F E+EL+ NITEH+LV ++ VL K++LL
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLL 160
>UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=1; Guillardia theta|Rep: RNA polymerase I, II
and III 24.3 kDa subunit - Guillardia theta (Cryptomonas
phi)
Length = 214
Score = 99 bits (238), Expect = 5e-20
Identities = 54/173 (31%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Frame = +2
Query: 116 MDDDAETYKLWRIRKTVMQLCHDRGYLV--TQDELDQTLEQFKEQFGDKPSEKRPARSDL 289
M+DD L+++R+TV+Q+ DRGY+V ++D+L+ + F+E + R L
Sbjct: 1 MNDDKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFY---MKNHAICRKSL 57
Query: 290 IVLVAHNDDPTDQMFVFF----PDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSA 457
+ D+P +++ + F D+ IG+K+I+ +C R++ E R ++++ ++P A
Sbjct: 58 EIKRPRWDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHA 117
Query: 458 KQSLVDM-APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLADIS*K 613
KQ++ + + ++E F E+EL++NIT H LVP+H +L+ +E + LL S K
Sbjct: 118 KQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIK 170
>UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa
polypeptide; n=1; Aspergillus terreus NIH2624|Rep:
DNA-directed RNA polymerases II 24 kDa polypeptide -
Aspergillus terreus (strain NIH 2624)
Length = 219
Score = 94.3 bits (224), Expect = 2e-18
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 3/164 (1%)
Frame = +2
Query: 113 NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 292
++D D E +LWR +TV ++ DR Q L + K + +P+E + +
Sbjct: 9 SVDADREMTRLWRTWRTVFEMLQDRPS--PQRILLTLASRAKMKIQARPTEAMQVKYTPL 66
Query: 293 VLVAHNDDPTD--QMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 463
+ P D ++V F PD + +G K ++ + + E N H I + Q +SPSA +
Sbjct: 67 TKQGQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVR 126
Query: 464 SLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
L+ P I E F E +LL+NIT HELVP+H++L+P+EK+ LL
Sbjct: 127 -LLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLL 169
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 580 KARTLGRYKLKENMLMRIQAGDPVA 654
K R L RY+LKE+ L RIQ DPVA
Sbjct: 165 KKRLLDRYRLKESQLPRIQVSDPVA 189
>UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein, expressed; n=5; Oryza sativa|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein, expressed - Oryza sativa subsp. japonica (Rice)
Length = 335
Score = 92.7 bits (220), Expect = 7e-18
Identities = 48/157 (30%), Positives = 98/157 (62%)
Frame = +2
Query: 131 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 310
E+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV----- 191
Query: 311 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 490
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 192 SDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KF 250
Query: 491 ILEQFLESELLINITEHELVPEHIVLTPDEKQELLAD 601
++ F ++LL+NIT+H L P+H VL+ D+K +LL +
Sbjct: 251 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKE 287
>UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=2; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 224
Score = 87.0 bits (206), Expect = 3e-16
Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 3/169 (1%)
Frame = +2
Query: 98 LSRL*NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPA 277
L R+ N + + ET + + RKT+M + HDRGY V++ +L +L +F+ +FG+ P +P
Sbjct: 15 LVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFP---KP- 70
Query: 278 RSDLIVLVAHNDDPTDQMFVFFP---DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMS 448
L V V+ +P+ ++ V FP D K + I++ + +E + R I+V+Q+ M+
Sbjct: 71 -HTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQI--VDKERLSRLILVMQSKMT 127
Query: 449 PSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
A++ L + K + Q ++LL+N+T+H L P++ VLT +EKQ+LL
Sbjct: 128 SYARKELENCPFKVEIIQL--NDLLVNVTKHVLQPKYEVLTANEKQKLL 174
>UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 202
Score = 83.0 bits (196), Expect = 6e-15
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Frame = +2
Query: 146 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTD 325
+RI T+ Q+ DRGY V L+ + ++F + + P S++ +
Sbjct: 10 FRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHNLNECYSNM---------EGE 60
Query: 326 QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAG-MSPSAKQSLVDMAPK-YILE 499
++ FF ++ KTI+T M E ++RAIV+ G ++P+A ++L ++ +E
Sbjct: 61 RILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIE 120
Query: 500 QFLESELLINITEHELVPEHIVLTPDEKQELL 595
F E++INITEHELVP+H VLT DEKQE+L
Sbjct: 121 FFSFDEVIINITEHELVPKHEVLTEDEKQEVL 152
>UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like protein;
n=2; core eudicotyledons|Rep: RNA polymerase 24kDa
subunit-like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 233
Score = 79.0 bits (186), Expect = 9e-14
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Frame = +2
Query: 131 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 310
E+ + + R T ++ DRGY V + EL TL +F+ FG+KP +R L + V
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELER-----LRICVPLR 89
Query: 311 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEE-NIHRAIVVVQAGMSPSAKQSLVDMAPK 487
DP ++ V F I +K+++ ++ +H I+V+Q+ M+ A+++L
Sbjct: 90 SDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF--P 147
Query: 488 YILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
+ +E F +LL+NIT+H P+ +L +EK++LL
Sbjct: 148 FTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLL 183
>UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 259
Score = 78.2 bits (184), Expect = 2e-13
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Frame = +2
Query: 140 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPAR-------SD-LIV 295
KLWR +T+ Q+ DRGY ++++E + ++E+F F D ++ SD ++
Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71
Query: 296 LVAHNDDPTD--------QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSP 451
L A PTD ++V F +E KIG+ K + + + I+V Q +S
Sbjct: 72 LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131
Query: 452 SAKQSL-VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLADIS*KRT 619
A+++L + +E F+ +LL+NIT HELVP+H++L+ EK+ LL K T
Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKET 188
>UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep:
Tcc44h21-2.4 - Trypanosoma cruzi
Length = 219
Score = 74.9 bits (176), Expect = 1e-12
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Frame = +2
Query: 140 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAH-NDD 316
K++R+ +TV ++ DR Y V + ++E+FK+ + D P E R + V
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD-PREGVIYRDRMTVPCERIGVS 75
Query: 317 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI- 493
+ VFF + + ++T+K Y T+ E N R I+VVQ ++ K+ + D+ +
Sbjct: 76 QRSRAMVFFSEG--LSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLG 133
Query: 494 --LEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
++ F E +L++NIT HELVP+H L +E +E+L
Sbjct: 134 LKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEML 169
>UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=7; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 248
Score = 71.3 bits (167), Expect = 2e-11
Identities = 42/156 (26%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Frame = +2
Query: 131 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 310
E+++ + R+TV+++ DRGY + DE+ +L+ F++ G P R L + H
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDR-----LRLTATHA 104
Query: 311 DDPTDQMFVFFPDEAKIGIKTIKTYCTR-MQEENIHRAIVVVQAGMSPSAKQSLVDMAPK 487
+P+ ++ V F + + ++ + + E++ I++VQ ++ A +++ ++ K
Sbjct: 105 TNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFK 164
Query: 488 YILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
+E F ++LL+N T+H L P+H VLT +K+ LL
Sbjct: 165 --VEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLL 198
>UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 212
Score = 69.3 bits (162), Expect = 7e-11
Identities = 43/146 (29%), Positives = 81/146 (55%)
Frame = +2
Query: 155 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 334
R T +++ DRGY TQ+ L L+ F E++ ++ RS L + + D P +
Sbjct: 22 RNTAIEMVRDRGYTTTQEVL--ALDGFHERYPLALTK----RSTLNFVCVNVDRP---VA 72
Query: 335 VFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLES 514
V F D+ K+G K + ++ +++N+ I+++ SP+ S++ + P++ +E FL
Sbjct: 73 VHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTV-MSMIPLTPRFSIEIFLVE 131
Query: 515 ELLINITEHELVPEHIVLTPDEKQEL 592
EL+ N T+H VP H VL+ +E++ +
Sbjct: 132 ELIFNKTKHSWVPPHRVLSREERESV 157
>UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1;
Bigelowiella natans|Rep: RNA polymerase I, II and III -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 204
Score = 63.7 bits (148), Expect = 4e-09
Identities = 38/152 (25%), Positives = 78/152 (51%)
Frame = +2
Query: 140 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 319
K + ++ ++ + RGY V + L+ QFK++ +K KR +S ++ H +D
Sbjct: 8 KYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEK---KRYFKS--FKIINHLNDT 62
Query: 320 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 499
+++ F+ ++ I + + + + N + I + + +S +L + +E
Sbjct: 63 NNKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIE 122
Query: 500 QFLESELLINITEHELVPEHIVLTPDEKQELL 595
F E E+LIN +H LVP+H++L PD K+++L
Sbjct: 123 IFFEYEILINPIKHFLVPKHVLLAPDIKRKIL 154
>UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113,
whole genome shotgun sequence; n=3; cellular
organisms|Rep: Chromosome undetermined scaffold_113,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 224
Score = 56.8 bits (131), Expect = 4e-07
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Frame = +2
Query: 119 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDEL---DQTLEQFKEQFGDKPSEKRPARSDL 289
+D A K +++ +T+ + RGY + D+ E F+ ++ ++ P R
Sbjct: 9 EDKASIKKKYKVFQTLASMIRQRGYFEANPPILIEDEPFELFEAKYR---TDVLPQR--- 62
Query: 290 IVLVAHNDDPTDQMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQS 466
V+ +D TD+M + F+ + + K Y + + + R I+V + Q
Sbjct: 63 -VVCFKKEDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTDPFATKPQV 121
Query: 467 L----------VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
+ V+ Y E F E +L+ ++T+HELVP+HI+L EK+ LL
Sbjct: 122 VEKKARFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLL 174
>UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia
intestinalis|Rep: GLP_738_3930_4619 - Giardia lamblia
ATCC 50803
Length = 229
Score = 54.0 bits (124), Expect = 3e-06
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Frame = +2
Query: 134 TYKLWRIRKTVMQLCHDRGYLVTQDE---------LDQTLEQFKEQFGDKPSEKRPARSD 286
T + +++R+TV+++ DRGY+V D+ L+QT + F +F P + +
Sbjct: 7 TAESFKVRRTVIEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTH 66
Query: 287 LIVLVAHNDDPTDQMFVF-FPDEAKIGIKTIKTYCTRMQEENIHRAIVVV--QAGM---S 448
+ + N + + V P K I +K + + R I V+ + G S
Sbjct: 67 KLRKSSANSLNQETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRVIYVIYGREGKKLDS 126
Query: 449 PSAK-QSLVDMAPK---YILEQFLESELLINITEHELVPEHIVLTPDEKQELLAD 601
P+ Q+ +D A + ++E FL + LLINIT+H LVP+H++L+ EK +L +
Sbjct: 127 PNKTIQARIDEAQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKE 181
>UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1;
Arabidopsis thaliana|Rep: RNA polymerase-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 178
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = +2
Query: 416 RAIVVVQAGMSPSAKQSLVDMA---PKYILEQFLESELLINITEHELVPEHIVLTPDEKQ 586
RAI+VVQ + ++Q+LV + P + +E F E EL++N+ EH VPEH LT +EKQ
Sbjct: 67 RAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQ 125
Query: 587 ELL 595
+ L
Sbjct: 126 KFL 128
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/43 (44%), Positives = 31/43 (72%)
Frame = +2
Query: 125 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGD 253
D E +L+ +++T+MQ+ DRGYL+ E+ TLE+F E++GD
Sbjct: 5 DEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGD 47
>UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerases II,
putative - Leishmania major
Length = 239
Score = 46.8 bits (106), Expect = 5e-04
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Frame = +2
Query: 131 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK------------------ 256
E +K +RI +T ++ DR Y V Q + +L +F E++ ++
Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69
Query: 257 -PSEKRPARSDLIVLVAHND---DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAI 424
P K+ R D + L + T + V+F + + +K E R +
Sbjct: 70 LPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIV 129
Query: 425 VVVQAGMSPSAKQSL--VDMAPKYI-LEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
V + +P ++++ + + + + E F E EL +NIT HELVP+H L+ +E +++L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189
>UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella
nidulans|Rep: RNA polymerase subunit - Emericella
nidulans (Aspergillus nidulans)
Length = 117
Score = 46.0 bits (104), Expect = 8e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +2
Query: 119 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK 256
D + ET ++WR +TV ++ DRGY VT++E+ L++FK ++ K
Sbjct: 21 DAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYAVK 66
>UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerase II,
putative - Leishmania major
Length = 342
Score = 41.9 bits (94), Expect = 0.013
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Frame = +2
Query: 329 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY------ 490
+ VFF K+ +K + ++ + ++ IVV + P + + +++ +
Sbjct: 196 LMVFFSGSPKLSMKEVHSFREKALKKKASSMIVVTNK-IDPGVRMDVQELSGRMDEATGA 254
Query: 491 ---ILEQFLESELLINITEHELVPEHIVLTPDEKQELLAD 601
++ F E L N+ HE VP H+ LTP E + LA+
Sbjct: 255 ELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAE 294
Score = 33.5 bits (73), Expect = 4.5
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 122 DDAETYKLWRIRKTVMQLCHDRGYLV 199
++ + +L+R T++QLCHDRGY++
Sbjct: 5 EELKVVRLFRALNTMIQLCHDRGYVI 30
>UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb5, C-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 275
Score = 39.5 bits (88), Expect = 0.069
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 488 YILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
Y E F +L+INIT+H+LVP+H+ L EK++L+
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLM 225
>UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, C-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 217
Score = 37.9 bits (84), Expect = 0.21
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Frame = +2
Query: 308 NDDPTDQMFVFFPDEAKIGIKTIKT----YCTRMQEENIHRAIVVVQAGMS---PSAKQS 466
N+ T+ + + F K+ KT K Y T + H +V + ++ K+
Sbjct: 67 NNTTTEALAIVFDFRDKLTHKTFKEDYFKYYTNADKPITHLILVHQEGSLAHIFDRIKKQ 126
Query: 467 LVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQEL 592
L + K LE F EL NIT H VP+H VL+ +EK EL
Sbjct: 127 LRLIGKK--LETFTLQELQYNITMHFFVPKHKVLSNEEKNEL 166
>UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia
intestinalis|Rep: GLP_25_26771_27376 - Giardia lamblia
ATCC 50803
Length = 201
Score = 36.7 bits (81), Expect = 0.49
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 512 SELLINITEHELVPEHIVLTPDEKQELLADI 604
S+ LIN T+H LVP+H +L+ EK +LA++
Sbjct: 124 SQFLINPTKHRLVPKHTILSNTEKARVLAEL 154
>UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putative;
n=2; Trypanosoma cruzi|Rep: DNA-directed RNA polymerase
II, putative - Trypanosoma cruzi
Length = 282
Score = 36.3 bits (80), Expect = 0.64
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 509 ESELLINITEHELVPEHIVLTPDEKQELL 595
E EL NI HE VP+H VL+P+E Q L
Sbjct: 204 EDELAYNIARHETVPQHEVLSPEEAQLFL 232
>UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 902
Score = 35.1 bits (77), Expect = 1.5
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +2
Query: 131 ETYKLWRIRKTVMQLCHDRGYLVTQ----DELDQTLEQFKEQFGDKPSEKRPARSDLIVL 298
ET + ++K V +L D LV + D+L + +EQ+ FGD EK R D+I
Sbjct: 671 ETSEYKDVKKAVKKLYRDHCELVKENEEKDKLLKEIEQWYRDFGDFHDEKLSIR-DMIKE 729
Query: 299 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRM 397
+ + ++P +M++ +E+K +T+ R+
Sbjct: 730 LDNRENPLTKMYMDVSNESKTVKETLVICAQRL 762
>UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2;
Photobacterium profundum|Rep: Putative uncharacterized
protein - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 246
Score = 34.7 bits (76), Expect = 2.0
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 428 VVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
+V+ S + L+D+ I E+ LES L IN + ++ P+ +LTPDE+ L
Sbjct: 123 LVEFAESKDLMEMLLDINKDSINEKKLESYLKINDDDPDITPDRNMLTPDERSRRL 178
>UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2;
Ehrlichia ruminantium|Rep: Putative uncharacterized
protein - Ehrlichia ruminantium (strain Gardel)
Length = 521
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 395 MQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH--ELVPEHI-V 565
++++N+H+ I + + L+ +A KYI++ L +IT+H L P+HI V
Sbjct: 430 IKDKNLHKTIHELLGTQQQVSCHELIKLARKYIMDSCLPHMQFYSITQHTINLNPKHITV 489
Query: 566 LTPD 577
TP+
Sbjct: 490 FTPE 493
>UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Rep:
SEC14-like protein 5 - Homo sapiens (Human)
Length = 756
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 404 ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEK 583
EN R ++ +G + LVD + ++ FL E + N+ E LVP+ + +T +E+
Sbjct: 501 ENTRRKFLIY-SGSNYQGPGGLVDYLDREVIPDFLGGESVCNVPEGGLVPKSLYMTEEEQ 559
Query: 584 Q 586
+
Sbjct: 560 E 560
>UniRef50_P15740 Cluster: DNA-directed RNA polymerase subunit H;
n=5; Halobacteriaceae|Rep: DNA-directed RNA polymerase
subunit H - Halobacterium salinarium (Halobacterium
halobium)
Length = 75
Score = 33.9 bits (74), Expect = 3.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 521 LINITEHELVPEHIVLTPDEKQELLADIS*KRT 619
++++++HELVPEH VL + +LAD RT
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRT 33
>UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:
Oligophrenin 1 - Homo sapiens (Human)
Length = 802
Score = 33.9 bits (74), Expect = 3.4
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +2
Query: 317 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 496
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 497 EQFLES 514
+ ES
Sbjct: 323 RRKTES 328
>UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in
chromosome partitioning; n=1; Nostoc punctiforme PCC
73102|Rep: COG1192: ATPases involved in chromosome
partitioning - Nostoc punctiforme PCC 73102
Length = 503
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 146 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 313
W R ++ +C D+GY + Q E D TL +++ K E+ + ++ V D
Sbjct: 443 WIPRLNIVSICQDKGYPLYQGEFDNTLVSQEKEAAQKVLERYTNLAQHLIKVTTGD 498
>UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance
protein; n=28; Magnoliophyta|Rep: TIR-NBS-LRR type
disease resistance protein - Populus trichocarpa
(Western balsam poplar) (Populus balsamiferasubsp.
trichocarpa)
Length = 1617
Score = 32.7 bits (71), Expect = 7.9
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 182 DRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKI 361
DRGY V EL ++L +F+ FG+ P L ++ +P ++ V F +I
Sbjct: 4 DRGYDVADTELTRSLMEFRSIFGNCPD-----LDSLRFSISLRSNPYNKNLVIFMGTDEI 58
Query: 362 GIKTIK-TYCTRMQEENIHRAIVVVQAGMSPSAKQ 463
I+ Y + +E+ I+++Q+ M+ AK+
Sbjct: 59 RTANIRAVYGQILSKESRQGLILILQSKMNHFAKK 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,089,862
Number of Sequences: 1657284
Number of extensions: 13439855
Number of successful extensions: 34270
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 33025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34236
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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