Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_B09
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...   112   5e-26
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   2.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   4.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.5  
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    26   5.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   7.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   9.5  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   9.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   9.5  

>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score =  112 bits (269), Expect = 5e-26
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
 Frame = +2

Query: 122 DDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQF-GDKPSEKRPARSDLIVL 298
           ++    +++R  KT  QL HDRGY V+Q ELD TL+QFK    G   +  R   S     
Sbjct: 4   EEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLS--FYA 61

Query: 299 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 478
              ND     +++ F  E  +GIK ++T+   + + N    I++    M+PSA + +  +
Sbjct: 62  KPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATV 121

Query: 479 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 595
             ++ +E F ES+L++NIT HELVP+HI+L+PDEK+ELL
Sbjct: 122 TGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELL 160



 Score = 32.3 bits (70), Expect = 0.063
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +1

Query: 580 KARTLGRYKLKENMLMRIQAGDPVA 654
           K   L RYKL+E  L RIQ  DPVA
Sbjct: 156 KKELLDRYKLRETQLPRIQLADPVA 180


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 395 MQEENIHRAIV--VVQAGMSP--SAKQSLVDMAPKYILEQFLE 511
           + + N+HR I+    + GM    SAKQ L D+ P  I+  +LE
Sbjct: 78  VDKSNLHRQIIHSTSKQGMHKAISAKQFLEDLNPNVIINTYLE 120


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
 Frame = +2

Query: 200 TQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL---------VAHNDDPTDQMFVFFPDE 352
           ++DELD++ +  +EQ   K  E +   S L +          +  N    + +     D+
Sbjct: 738 SKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDK 797

Query: 353 AKIGIKTIKTYCTRMQEENIH 415
            K  +  +++  + +Q++N H
Sbjct: 798 LKADLSNLESKLSSLQQDNFH 818


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 212  LDQTLEQFKEQFGDKPSEKRPARSDLI-VLVAHNDDPTDQM 331
            LD+ L++ KE   D   EK     DL+  LV +ND+  D +
Sbjct: 914  LDRLLQKVKEHSEDNTKEKHQQLLDLLESLVGNNDNLIDSI 954


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 465 DCLADGDIPAWTTTIAL*IFSSCILVQYVFIVFIPILAS 349
           D L +  +PA + T+   +FSS +    +F+VF+ ++ S
Sbjct: 586 DILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNS 624


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 195 KYPRSWHNCITVLRIRQSL*VSASSSMFYNLL-KTDKS 85
           K P SW   I +L ++ S+        FY LL + DKS
Sbjct: 168 KIPNSWEMLIEILELKHSVMTKRVIFFFYALLIQEDKS 205


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 430  NNNSPMNILFLHSCTICLYSFYTN-FSFIRKENKHL---IRWIIIMSH*HNQITSCWSFL 263
            N +  +  +F  S   C Y+   + ++F   ++K +   + WI+++ H  +   + W+ +
Sbjct: 983  NVSDTLKNMFSTSDFSCAYNSVEDLYAFTSMKSKEILPEVLWIMLLVHLADLCENSWASV 1042

Query: 262  TWFIAKLLFKLF 227
                A++LF++F
Sbjct: 1043 RNGAAQILFRIF 1054


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
 Frame = -3

Query: 421 SPMNILFLHSCTICLYSFYTNFSFIRKENKHLI-------RWIIIMSH--*HNQITSCWS 269
           S + ILF+  C +CL  F   +S+  +E   +I        W++   +   H  I+  WS
Sbjct: 549 SLLKILFISLCILCLLQFIV-YSYFHREGFSVILMGLAAWPWLLHADYAFSHKTISVSWS 607

Query: 268 FLT 260
            LT
Sbjct: 608 VLT 610


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
 Frame = +2

Query: 443 MSPSAKQSLVDMAPK------YILEQFLESELL---INITEHELVPEHIVLTPDEKQELL 595
           +S + ++S  D AP+      +++E  +  +L+   +N+ E +L P   +LT +E  ELL
Sbjct: 229 VSTTKRRSRWDKAPENFTISEHVIENGISEDLINKEVNVVEEKLRPPVRLLTEEELNELL 288


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 537 NTSW-YRNILC*HRMKSKNSWQI*AEREHVD 626
           NT W Y+N+L  +  K+  S+ I +E+E +D
Sbjct: 498 NTEWDYQNLLKGYGAKNSRSYNIHSEKELLD 528


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 146 WRIRKTVMQLCHDRGYLVTQD 208
           W   +TV +LC  +GY V +D
Sbjct: 211 WTWEQTVRELCDAKGYYVMKD 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,011
Number of Sequences: 5004
Number of extensions: 60751
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)