Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_B07
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   9.4  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +1

Query: 121  MNDEDTTKRKLRLWSVLPYEVIKNKMKGINQLE--EEQIKSETESKPYIISETV**NYIK 294
            MND     +  RL S+L   +IKN   G+  L   E+ +++        + +      I 
Sbjct: 1090 MNDAPRRAKGYRLESLLRASMIKNDKTGLTLLHTIEKIVRTHFPQLEAFLVDLKAIPEIS 1149

Query: 295  FFNH*LIAQNSNVICSRAIKIQE 363
             FN   + Q+ N IC R   +++
Sbjct: 1150 RFNLEQLEQDCNDICERMKNVEK 1172


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +1

Query: 145 RKLRLWSVLPYEVIKNKMKGI------NQLEEEQIKSETESKPYIISET 273
           +++ L S+ PY  + +K+KG+      N +   Q  S   ++PYI S T
Sbjct: 31  QEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKPSSKATRPYIPSYT 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,587
Number of Sequences: 5004
Number of extensions: 41715
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)