Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_B01
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 66 4e-12
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 2.3
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 3.1
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 4.0
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 7.1
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 7.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.3
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 66.1 bits (154), Expect = 4e-12
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Frame = +2
Query: 239 RAELAELVKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKA 418
+ EL E+++++ + +L LE IY EGSYLE T GNIIRG++ L N S
Sbjct: 22 KKELHEMIEKRQLLETSLIGLEDSIYRLEGSYLEKTSGTGNIIRGFEGLLKNNASNL--- 78
Query: 419 DKRNRKFKEAERLFSKSSITS---MAAVSGLVDAAEAKNERNSETESQTNE 562
+R + E++RLFS SS++S + L D+ E R + ES ++E
Sbjct: 79 -RRRADYSESDRLFSLSSLSSPHTRSPAYDLDDSTETSRRRKRKNESDSHE 128
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 27.1 bits (57), Expect = 2.3
Identities = 29/114 (25%), Positives = 50/114 (43%)
Frame = +2
Query: 116 KTQVTTIISMVISPQSPIDDAQSVQTKRTNMATKQSSVADTRAELAELVKRKAEVAETLA 295
K + ++++ S Q P A + R MATK SS AD+ + L + +A + TL
Sbjct: 260 KAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPV-PLDREQAHILPTL- 317
Query: 296 NLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKFKEAERL 457
N + + S++ T+L + L N + SK R +F+ + L
Sbjct: 318 NTDS---FHKSSFISSTRL----CSPENPSLLVNTAKTSKMSARREQFQTNQNL 364
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 359 NIIRGWDRYLTT--NKSTNSKADKRNRKFKEAERLFSKSS 472
++++ + R LTT N + ++K+N +AERLF K++
Sbjct: 1204 HVVQSFCRLLTTWMNPNLMHDSNKKNSSLTDAERLFVKAT 1243
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 398 KSTNSKADKRNRKFKEAERLFSKSSITSMAAV-SGLVDAAEAKNERNSETESQTNEDSSD 574
+S S A +K K+ FS + T+ SG+ D A+ + S + + + SD
Sbjct: 582 ESMISTAQAAMQKAKQIAINFSSNLATNEDVTNSGMPDIADVSLKSQSHVPPRISSNHSD 641
Query: 575 TQISSN 592
T + SN
Sbjct: 642 TSVKSN 647
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 479 SMAAVSGLVDAAEAKNERNSETESQTNEDSSDTQISSN 592
S AAVSGL+ + + NS + + + S++ +SN
Sbjct: 501 SAAAVSGLIGSFMGSSSNNSNSSNNNSNTSNNNSNTSN 538
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 179 QSVQTKRTNMATKQSSVADTRAELAELVKRKAEVAETLANL 301
Q++Q K TN+ + AD+R +L K A + L L
Sbjct: 172 QALQMKDTNLTNLEKLFADSREQLETKCKELAAAEQQLQEL 212
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 362 IIRGWDRYLTTNKSTNSKAD 421
++ WDRYL N S N + D
Sbjct: 231 LLEEWDRYLMQNGSENDRPD 250
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 9.3
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +2
Query: 275 EVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKFKEAER 454
E + A+++R+I A Y + + +++ T K ++ ++ K+ R
Sbjct: 449 EQFKRFAHMQREIVAMSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQETKDLAR 508
Query: 455 LFSKSSITSMAAVSGLVDAAEAKNERNSETESQTNEDSSDTQ--ISSNL 595
+G+V +++ + NS E ED +DT ISS L
Sbjct: 509 QVQVLLHELDLCENGIVLGVDSRKKINSYVEKSLTEDETDTDQIISSRL 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,391
Number of Sequences: 5004
Number of extensions: 40041
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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