Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_A24
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    28   1.4  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   1.8  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   3.1  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   4.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   9.5  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   9.5  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 209 FGSAENRRSPF-SIFDTNPRILT 274
           +G   N +SPF  IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 58   INKFCPKVVIILYICYLLHYF*IITRNFIYSINKK 162
            I+ FC    +IL+I  L H   I+ +N  Y+I++K
Sbjct: 899  ISHFCISNFLILFITALEHASAILCKNITYTIHEK 933


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 581 PPYNGAALGTDTPQGESS 528
           PPY+ AA  ++TPQ E+S
Sbjct: 112 PPYSPAATASNTPQNEAS 129


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 647 RLSPAWFWYRGSQRGCLHPCPYPPYN 570
           ++ P  +W    +R CL   PYP +N
Sbjct: 102 KVFPKVYWIFNHRRWCLENAPYPNWN 127


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 209 FGSAENRRSPFSIFDT---NPRILTEMAYQRAPTVVGVPNFNAVEDAAA 346
           F S     SP S FD    +P++       R P+   +  F+ + DAA+
Sbjct: 348 FKSPSLSASPGSNFDNMSISPKVAVNRYIHRGPSATSLNKFSMISDAAS 396


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 152 LIKRNCFFYNSHTVSP 199
           LI  NCF YNSH   P
Sbjct: 370 LIWSNCFLYNSHPDHP 385


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 609 TRVSSSVPIPSIQRCSSWHRYSSGGVI-RATITS 511
           T V  S+P+PSIQ   S     +G  + R ++TS
Sbjct: 375 TEVELSIPVPSIQEAESQKPVLTGSSMRRPSVTS 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,471
Number of Sequences: 5004
Number of extensions: 57241
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)