Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_A20
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30093-1|CAA82909.1| 303|Homo sapiens basic transcription facto... 93 6e-19
BC065250-1|AAH65250.1| 308|Homo sapiens general transcription f... 93 6e-19
BC047868-1|AAH47868.2| 303|Homo sapiens GTF2H3 protein protein. 93 6e-19
BC039726-1|AAH39726.1| 303|Homo sapiens GTF2H3 protein protein. 93 6e-19
AF548661-1|AAN40702.1| 308|Homo sapiens general transcription f... 93 6e-19
BC031030-1|AAH31030.1| 235|Homo sapiens Unknown (protein for IM... 60 7e-09
>Z30093-1|CAA82909.1| 303|Homo sapiens basic transcription factor
2, 35 kD subunit protein.
Length = 303
Score = 93.5 bits (222), Expect = 6e-19
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 172 VIVDTNP---NQRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYP 342
++VD NP ++ + E L+ +DAV+ NSHL SN+LAVI H +S +LYP
Sbjct: 13 IVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYP 72
Query: 343 S-----------PGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESX 480
PG P + DG+YEL T + I + +L+ + + E+
Sbjct: 73 GKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETL 132
Query: 481 XXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 651
C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 133 LAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 189
>BC065250-1|AAH65250.1| 308|Homo sapiens general transcription
factor IIH, polypeptide 3, 34kDa protein.
Length = 308
Score = 93.5 bits (222), Expect = 6e-19
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 172 VIVDTNP---NQRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYP 342
++VD NP ++ + E L+ +DAV+ NSHL SN+LAVI H +S +LYP
Sbjct: 13 IVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYP 72
Query: 343 S-----------PGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESX 480
PG P + DG+YEL T + I + +L+ + + E+
Sbjct: 73 GKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETL 132
Query: 481 XXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 651
C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 133 LAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 189
>BC047868-1|AAH47868.2| 303|Homo sapiens GTF2H3 protein protein.
Length = 303
Score = 93.5 bits (222), Expect = 6e-19
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 172 VIVDTNP---NQRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYP 342
++VD NP ++ + E L+ +DAV+ NSHL SN+LAVI H +S +LYP
Sbjct: 8 IVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYP 67
Query: 343 S-----------PGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESX 480
PG P + DG+YEL T + I + +L+ + + E+
Sbjct: 68 GKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETL 127
Query: 481 XXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 651
C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 128 LAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 184
>BC039726-1|AAH39726.1| 303|Homo sapiens GTF2H3 protein protein.
Length = 303
Score = 93.5 bits (222), Expect = 6e-19
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 172 VIVDTNP---NQRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYP 342
++VD NP ++ + E L+ +DAV+ NSHL SN+LAVI H +S +LYP
Sbjct: 8 IVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYP 67
Query: 343 S-----------PGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESX 480
PG P + DG+YEL T + I + +L+ + + E+
Sbjct: 68 GKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETL 127
Query: 481 XXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 651
C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 128 LAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 184
>AF548661-1|AAN40702.1| 308|Homo sapiens general transcription
factor IIH, polypeptide 3, 34kDa protein.
Length = 308
Score = 93.5 bits (222), Expect = 6e-19
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Frame = +1
Query: 172 VIVDTNP---NQRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYP 342
++VD NP ++ + E L+ +DAV+ NSHL SN+LAVI H +S +LYP
Sbjct: 13 IVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYP 72
Query: 343 S-----------PGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESX 480
PG P + DG+YEL T + I + +L+ + + E+
Sbjct: 73 GKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETL 132
Query: 481 XXXXXXXXXCFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 651
C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 133 LAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 189
>BC031030-1|AAH31030.1| 235|Homo sapiens Unknown (protein for
IMAGE:4724313) protein.
Length = 235
Score = 60.1 bits (139), Expect = 7e-09
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +1
Query: 337 YPSPGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXX 507
+ PG P + DG+YEL T + I + +L+ + + E+
Sbjct: 9 FGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKAL 68
Query: 508 CFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQV 651
C+I R + SRILV+ + D+A QY+N+MNV F AQK+ +
Sbjct: 69 CYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNI 116
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,984,585
Number of Sequences: 237096
Number of extensions: 1854381
Number of successful extensions: 3327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3321
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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