Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_A15
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   4.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   5.5  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   5.5  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   9.5  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   9.5  

>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 473 YFLDKISKKFHLSKSRLSALNESGQLIVFHLVTLVWGW 586
           YFLDK ++    + S+   +N    ++ F  V + WGW
Sbjct: 186 YFLDKTNR----TGSKFQMINGFILIVTFICVRIAWGW 219


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +1

Query: 247 YCXMCXYGFPGWIDGTVYKSHCK-LVHQFTPQCQWSGTNERSAERRTFYL*IWVERCLCR 423
           YC  C    P     + +   CK  ++++   C W+G    +   RTF L ++    L  
Sbjct: 401 YCLKCFQVKP---PRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIP 457

Query: 424 VXLFTCLY 447
           +  +   Y
Sbjct: 458 IYFYVAFY 465


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 302 SPIASLFISLHHNVSGVEPTREAPKGEPFTYESGWKD 412
           +P+     SL H  SG+ P  +   G P  +   W D
Sbjct: 149 TPMVRALESLEHVFSGLYPESKRKMGLPVIFTRNWSD 185


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 392 YESGWKDACAVXXYSLVCIVMHAILQEYFLDKISKKFHLSKSRLSALNESGQLIVFHLVT 571
           Y   W     V  ++L+  +  +++    LD+I+ +FH+  S   AL  S  L+VF +  
Sbjct: 41  YARKWTQLILVSAFALLGPMASSMVAPC-LDQIADRFHIQNSTEKALILSIYLLVFAISP 99

Query: 572 LV 577
           ++
Sbjct: 100 MI 101


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +2

Query: 299 TSPIASLFISLH---HNVSGVEPTRE 367
           ++P  S+F+ LH   HN +G++PTRE
Sbjct: 176 SAPEGSIFL-LHACAHNPTGIDPTRE 200


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 210 MGGFLLVFRPIAGFTPIFVGIN 145
           M GFL++F PI    PIF  +N
Sbjct: 502 MFGFLVMFSPIYPLAPIFSLVN 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,368
Number of Sequences: 5004
Number of extensions: 56029
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)