Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_A15
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    26   0.37 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.48 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = +2

Query: 212 FSHEFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLHHNVSGVEPTREAPKGEPFT 391
           F+H     NH  ++ CV    + G++V S    A  +  L   V G   +        + 
Sbjct: 297 FAHPREEFNHWTVMRCV-QAMIAGIVVISAG--ADAYPPLAAIVLGAIGSIVFYIISRYV 353

Query: 392 YESGWKDACAVXXYSLVCIVMHAILQEYF 478
           + S  +D C +    LVC ++ +IL  +F
Sbjct: 354 FRSALEDYCNIVATHLVCGILGSILVPFF 382



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 401 GWKDACAVXXYSLVCIVMH 457
           GW+  C +   +LV I+M+
Sbjct: 398 GWQMICLIVVIALVSIIMY 416


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 277 GWIDGTVYKSHCKLVHQFTPQCQWS 351
           G I+    K   K   +F P+C+WS
Sbjct: 134 GNIEAVTTKEKAKFPQEFFPECKWS 158


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 268 GFPGWIDGTVYKSHCKLVHQFTP 336
           G   W    VYKS C +  +F P
Sbjct: 139 GLVVWQPPAVYKSSCSIDVEFFP 161


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 320 TSLQWDL*TVPSIQPGK 270
           TS++WD+  VP+++  K
Sbjct: 202 TSVEWDILEVPAVRNEK 218


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 183 PIAGFTPIFVGINL 142
           P  G T +F+G+NL
Sbjct: 71  PARGLTAVFLGLNL 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,099
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)