Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_A07
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    93   4e-20
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.94 
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   2.9  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   3.8  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.6  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +3

Query: 96  WQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFT 275
           WQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ KVRAGRGFT
Sbjct: 18  WQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGFT 76

Query: 276 LREIRAAGLNPVFARTIGIAVDPR 347
           L E++AAG++   A TIGI VD R
Sbjct: 77  LEELKAAGVSRRVASTIGIPVDHR 100



 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = +1

Query: 349 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPA 525
           RRN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEA 159

Query: 526 PKSVARPITEDEKNFKAYQYLRGARSIAK 612
            +  A+PITE+ KNF A+  L   R+ A+
Sbjct: 160 VEE-AKPITEEAKNFNAFSTLSNERAYAR 187


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -2

Query: 281  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 162
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 269 IHSS*N*GRRIEPSICPNDWNCCRSPLDATSLLNHCKSMFKE 394
           +H S N G  ++P +  N WN     +D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 448 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 561
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 262 VEDSLFVKLGPQD*TQYLPERLELL 336
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,275
Number of Sequences: 5004
Number of extensions: 51455
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)