Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_A03
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 31 0.20
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.79
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 29 0.79
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.2
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.6
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 7.4
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 9.7
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 25 9.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 9.7
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 234 RSPKMKPAEVKA*RS*RMNRSKIIHCSVENTRLDSTRTRSTIWRPKFR 377
++P PAE+ + + ++ IH +E RLDS+R +++ P R
Sbjct: 1053 KTPNTSPAELLGIKFTTLPMAQYIHSELEALRLDSSRNEQSLFMPNKR 1100
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 28.7 bits (61), Expect = 0.79
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +2
Query: 356 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVIC 502
HL AF L PK E++ + C + NP + FV C
Sbjct: 229 HLKKGEVAFTELAPPKLPFEINVSTTDICKICGEKIKNPAVLSTGFVFC 277
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 28.7 bits (61), Expect = 0.79
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 386 RLLAPKGSLEVHEEAWN--AYPYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHELP 559
RLLA + EVH+ N Y Y + PGY K V E+L+ GD + LP
Sbjct: 256 RLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQGDIVCIQILP 315
Query: 560 PEKLKT 577
++ KT
Sbjct: 316 QDQWKT 321
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 362 ASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTV 460
++K+P I L+ G+L V + + YPY +TV
Sbjct: 331 SAKMPVLIEDLSFTGNLRVKVKLIDKYPYAKTV 363
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 440 YPYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHELPPEKLKTREVVPIDI 601
YPYC+ VL P + + ESL +YN+ E+P L + VPI I
Sbjct: 1389 YPYCQVVLNEPNFYFQVLPYKGESL------SKYNLAEIP---LLDSKKVPIQI 1433
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 512 LHLPDAGDQYNVHELPP--EKLKTREVVPIDIANXPLPSADYKSETD 646
L PD D N LP E + +P+D+A+ LPS Y S+ +
Sbjct: 83 LDFPDTLDLTNPDALPVLGESIVNPISLPVDVASPFLPSECYPSKVE 129
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 597 SMGTTSRVFSFSGGSSWTLYWSPASGKCSDSIHITKFSFM*PGFVSTVLQYG 442
++GT + ++SG +T PASG S ++ + + + G V+T LQ G
Sbjct: 253 AVGTVTTT-TYSGSVEYTTTLVPASGSVSGTVEVVEPAV---GTVTTTLQSG 300
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 458 VLTNPGYMKENFVICIESLHLP 523
VLTNPG +K + +C++ P
Sbjct: 174 VLTNPGAVKRTYNLCLDISKYP 195
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 588 TTSRVFSFSGGSSWTLYWSPASGKC 514
T S VF +G ++W + +PA+G C
Sbjct: 328 TKSGVFVAAGHANWGITQAPATGLC 352
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 489 FSFM*PGFVSTVLQYG*AFHASSCTSRDPFGASSLMKAGTL 367
F F+ PGF+ T + F SRD +S + GTL
Sbjct: 1537 FDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTL 1577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,650
Number of Sequences: 5004
Number of extensions: 58346
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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