Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_A03
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0616 - 9874882-9874974,9875067-9875189,9875284-9875379,987...    79   4e-15
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     29   3.3  
11_01_0482 - 3714442-3715593                                           28   5.8  
06_02_0172 + 12594542-12596083                                         28   5.8  
02_05_0948 - 33003921-33006269                                         28   5.8  
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88...    28   7.6  

>03_02_0616 -
           9874882-9874974,9875067-9875189,9875284-9875379,
           9875457-9875666,9875718-9875812,9876032-9876123,
           9876539-9876660
          Length = 276

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 59/153 (38%), Positives = 81/153 (52%), Gaps = 17/153 (11%)
 Frame = +2

Query: 233 EVSKNETGGGEGIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSL 412
           ++ +  T   EG+EV++  PF+D  L  GK   GQYT K YHL SK+P++++  AP  +L
Sbjct: 2   KMEQQNTNSKEGVEVLQQVPFEDEKL--GK---GQYTSKNYHLQSKIPSWMKGFAPASAL 56

Query: 413 EVHEEAWNAYPYCRTVLTNPGYMKENFVIC---IESLHLPDAG----------DQYNV-- 547
            VHEE+W AYP  RT      Y    F  C   I+++  PD G           ++NV  
Sbjct: 57  TVHEESWCAYPNSRTGFLIICYQCPLFSKCSLTIDTVIRPDNGCSENTKRQILREHNVHN 116

Query: 548 --HELPPEKLKTREVVPIDIANXPLPSADYKSE 640
             H L  E+L  REV  +DIA   L S DY S+
Sbjct: 117 QAHNLTSEQLAAREVEVVDIA---LQSRDYWSK 146


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 479 CNRDSSALFYSTGRRSTLLRVLREILSEQ 393
           C  D S + ++TG  STLL  L E+L EQ
Sbjct: 3   CLSDPSGMEFATGVMSTLLSKLAELLKEQ 31


>11_01_0482 - 3714442-3715593
          Length = 383

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 535 PIQCPRAAA*ETKDPRGGPHRHC 603
           P++ P  A  E  D RGG  RHC
Sbjct: 285 PVEAPAGAFDEEHDRRGGNRRHC 307


>06_02_0172 + 12594542-12596083
          Length = 513

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 356 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVL 463
           H+  K+ A +R + PKG   V EE     PY + V+
Sbjct: 333 HVMGKLQAEVRRVMPKGQDIVTEEQLGCMPYLKAVI 368


>02_05_0948 - 33003921-33006269
          Length = 782

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 618 GRGSFAMSMGTTSRVFSFSGGSSWTLYWSPASGKCSDSIHITKFSF 481
           GRGSFA + G      SFSGG   T  ++ AS  C++ +   KF +
Sbjct: 155 GRGSFAPTDGLGPPPASFSGGCVSTASFN-ASAYCNNKLIGAKFFY 199


>11_01_0113 +
           881806-881996,882831-882921,883140-883255,884489-885260
          Length = 389

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 608 RSQCLWGPPRGS-LVSQAAARGHCIGRRRP 522
           RS C W   +G  +V   A+ G+C G RRP
Sbjct: 44  RSPCPWSVEKGEEVVLVHASMGNCFGGRRP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,563,082
Number of Sequences: 37544
Number of extensions: 407135
Number of successful extensions: 1071
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)