Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P24
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   107   2e-24
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   106   2e-24
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    31   0.14 
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   2.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.0  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.0  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  107 bits (256), Expect = 2e-24
 Identities = 46/76 (60%), Positives = 60/76 (78%)
 Frame = +3

Query: 285 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 464
           RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 465 SPCHIEVCLSEREDAV 512
           SP HIE+ ++E E+AV
Sbjct: 142 SPSHIEIIVAEEEEAV 157



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +2

Query: 113 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 280
           HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  106 bits (255), Expect = 2e-24
 Identities = 46/76 (60%), Positives = 59/76 (77%)
 Frame = +3

Query: 285 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 464
           RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 465 SPCHIEVCLSEREDAV 512
           SP HIE+ ++E E+AV
Sbjct: 142 SPSHIEIIVAEEEEAV 157



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +2

Query: 113 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 280
           HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 255 KQSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 434
           K  S +QH+   PK SA  LL +LR+      N TL++  +  D I      C +R+  R
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRITEANPTCEKRKPSR 208

Query: 435 A 437
           +
Sbjct: 209 S 209


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 273 QHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 383
           +H   WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 4   EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 278 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 195
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -2

Query: 357 FCCQRLIQRSSITARGI------RRISWASXPCVVPNCFA*AQRPTPPLKRRNGIHSFFS 196
           FC   LI   S  A+ +      R ++  +   ++PN  A   R  PP K++N I + F 
Sbjct: 122 FCIWSLISGFSYYAKSVIMFDVCRALTGIAPAFLLPNALALLGRVYPPGKKKNLIFALFG 181

Query: 195 IT 190
            T
Sbjct: 182 AT 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,021
Number of Sequences: 5004
Number of extensions: 48969
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)