Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P24
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   124   6e-29
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   120   1e-27
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   3.1  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   4.1  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    28   7.2  
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580...    27   9.6  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    27   9.6  

>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  124 bits (299), Expect = 6e-29
 Identities = 57/85 (67%), Positives = 68/85 (80%)
 Frame = +3

Query: 258 QSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 437
           +S  +  + RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A   RRRTYRA
Sbjct: 86  KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRA 145

Query: 438 HGRINPYMSSPCHIEVCLSEREDAV 512
           HGRINPYMSSPCH+E+ LSE+E+AV
Sbjct: 146 HGRINPYMSSPCHVELILSEKEEAV 170



 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
 Frame = +2

Query: 71  LRNHAKRVVQTSXVHF-KNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGR 247
           LR H K +V    V    NT ETA A+RK+PL +A RYL++VI  K+ IPFRR+ GGVGR
Sbjct: 22  LRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGR 81

Query: 248 CAQAK 262
            AQ K
Sbjct: 82  TAQVK 86



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  MGRYSREPDNPAKSCKARGSNLR 108
           MG+YS EP NP KS KA G +LR
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLR 23


>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/76 (72%), Positives = 63/76 (82%)
 Frame = +3

Query: 285 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 464
           RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYRAHGRINPYMS
Sbjct: 83  RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMS 142

Query: 465 SPCHIEVCLSEREDAV 512
           SPCHIE+ LSE+E+ V
Sbjct: 143 SPCHIELILSEKEEPV 158



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/51 (70%), Positives = 42/51 (82%)
 Frame = +2

Query: 110 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 262
           VHFKNT ETA AIRK+PL +A RYL++VI  K+ IPFRR+ GGVGR AQAK
Sbjct: 24  VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAK 74



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  MGRYSREPDNPAKSCKARGSNLR 108
           M +YSRE +NP KS KA G +LR
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLR 23


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 294  KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 419
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 357  FCCQRLIQRSSITARGIRRISWASXPCVVPNCFA*AQRPTPP 232
            F C RL  +S+   RG+  I WA+   V P   A   +P  P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 466 LPATSKYVSANAKMLSPXVAPTDDAPA 546
           LPA+S  +S+N + LSP   PT    A
Sbjct: 522 LPASSSLISSNTENLSPQALPTSSESA 548


>06_01_0776 -
           5805555-5805639,5805769-5806008,5806103-5806173,
           5806274-5806627
          Length = 249

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 537 CPSEEKAFQEKACASKGEDDE 599
           C  EE+A  EK C   GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 258 QSSLAQHRXRWPKKSAEFLLQLLRNAESNAD---NKTLDVDRLVIDHIQ 395
           Q SL     RWP ++AE      RN E NA+   ++T++ D    DH+Q
Sbjct: 427 QPSLDDSLDRWPNETAE---DAERNWEDNAEELHSETMEDDAREHDHLQ 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,395
Number of Sequences: 37544
Number of extensions: 353950
Number of successful extensions: 901
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)