Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P22
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   163   6e-41
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   2.2  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ...    27   6.6  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  163 bits (396), Expect = 6e-41
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +2

Query: 152 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 331
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 332 IVNNKGEMKGSAITGPVAKECADLWPR 412
           IVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 30/35 (85%), Positives = 34/35 (97%)
 Frame = +1

Query: 46  AGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 150
           +GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V G
Sbjct: 10  SGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYG 44


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = -3

Query: 192 PEPAAGSLFRRPLIXLDCDHIQILCPCVVGAVDYCSHWETQGDTEFRSRXNHHVLS*TF 16
           PEP  G         +D   IQ+   C V   + C H    G  + +   N+++L+  F
Sbjct: 354 PEPTPGQGPSGECCYIDLRRIQVTVSCGVSIGNQCCHQSCSGTYQRQINLNYYILTQIF 412


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 337 DYDTRIVLKVYKYSITPSERFPL 269
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 146 WTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAGTTTSSLRHFVVSN 3
           ++  T  FF PVL+ + +T  T R           TTT++LR++   N
Sbjct: 353 YSTSTTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNYRKDN 400


>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
           protein H04J21.1 protein.
          Length = 1032

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 95  ITAPTGRPREIRNFAPAGTTTSSLRHFVV 9
           +TA   +P+E   ++P  +T+SS  HF++
Sbjct: 88  VTAAILKPQESPKYSPDSSTSSSSHHFIL 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,987,770
Number of Sequences: 27780
Number of extensions: 234412
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)