Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P16
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    45   8e-06
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   1.8  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   9.5  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 30/114 (26%), Positives = 47/114 (41%)
 Frame = +3

Query: 267 QKEYFTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXX 446
           Q   F+LSR +R                      PVL+L+ RKF                
Sbjct: 56  QSSEFSLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFA 115

Query: 447 XXYGPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMA 608
              G  AH + + + ER   T  Y +TL+AT+   + ++ST  +IV  VL +++
Sbjct: 116 IVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILS 169


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 355 HLSTYQFFYYKLGNLLYCSHWEVYSLYLVSAFCTDHGHI*SQCSQRK 495
           HLST +      G  L C+H +++ L  +  +C + G   S  S +K
Sbjct: 601 HLSTPKIIPVYGGRTLSCTHKDIFDLQNILRYCDERGDFSSFPSFKK 647


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 476 VNVLKGKSSYNINLQYNFDSDIILCLTSSKYTVDHSMCCLTSHGIILDDDGVYTRRIIG 652
           V+ L  +S + +  ++   SD  L  T+    ++ ++C     GI   D+G Y   +IG
Sbjct: 390 VSGLPLRSFHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTGIANTDNGAYDIYMIG 448


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 166 VINLVYQVFQRLPSCLVILRRLRRAQQAVG 255
           VI+L++ +   LPSC+++    R+   A+G
Sbjct: 318 VISLIFTLISILPSCVILFLYPRKRLLALG 347


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 255 TNCLLCSSESPQYYETGRQALKNLVN*IYNSD-DFRFEANIDLNLTLDLPFSCF 97
           TN   CS+ SP YY      L+  +N    S  +    + +DL L + L  +C+
Sbjct: 127 TNPTYCSTPSPSYYFNPLTMLETSINNATGSQINITLPSEVDLGLKV-LKGACY 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,290
Number of Sequences: 5004
Number of extensions: 47369
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)