Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P14
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   145   4e-36
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   145   4e-36
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   6.4  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   6.4  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.4  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   8.4  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  145 bits (351), Expect = 4e-36
 Identities = 65/89 (73%), Positives = 79/89 (88%)
 Frame = +2

Query: 128 PRKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 307
           P KFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+
Sbjct: 2   PPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVK 61

Query: 308 LTVQNRQAQIAVVPSAAALIIRALKEPPR 394
           LT+QNRQA ++VVPSA+AL+I+ALKEP R
Sbjct: 62  LTIQNRQAAVSVVPSASALVIKALKEPAR 90


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  145 bits (351), Expect = 4e-36
 Identities = 65/89 (73%), Positives = 79/89 (88%)
 Frame = +2

Query: 128 PRKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 307
           P KFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+
Sbjct: 2   PPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVK 61

Query: 308 LTVQNRQAQIAVVPSAAALIIRALKEPPR 394
           LT+QNRQA ++VVPSA+AL+I+ALKEP R
Sbjct: 62  LTIQNRQAAVSVVPSASALVIKALKEPAR 90


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 178 DTSQIHDFNFIWVKLTGAFC*LLSSTLYY 92
           ++ Q  D NF  + L    C  +SST+YY
Sbjct: 122 NSQQFRDANFCKLVLVWTVCQCVSSTVYY 150


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 204 DDVAPTSPPTHRKFTILI 151
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 376 P*GASPVTVKSRXISNANGNISLEDVVGIAKIMRN 480
           P   + + + +  IS  NG++ + DV  +  I+RN
Sbjct: 181 PRNQASIAIGNHKISKRNGDMDVSDVPSVYLILRN 215


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 224 PLGLS--PKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 343
           PLG+   PKK+ +++A+      G+K+T   +VQ+    I V
Sbjct: 381 PLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPV 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,534
Number of Sequences: 5004
Number of extensions: 39179
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)