Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_P14
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 135 2e-32
02_05_0416 + 28791512-28792012 135 2e-32
09_02_0178 + 5399982-5400048,5400421-5400518 28 3.7
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 28 4.8
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 27 6.4
07_03_0313 + 16620817-16621515 27 6.4
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 6.4
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 27 6.4
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 27 8.5
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 8.5
03_06_0499 - 34354040-34354528 27 8.5
>04_04_1026 + 30214437-30214937
Length = 166
Score = 135 bits (327), Expect = 2e-32
Identities = 64/90 (71%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
Frame = +2
Query: 128 PRKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 304
P K DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2 PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61
Query: 305 QLTVQNRQAQIAVVPSAAALIIRALKEPPR 394
+LTVQNRQA+++VVPSAAAL+I+ALKEP R
Sbjct: 62 KLTVQNRQAKVSVVPSAAALVIKALKEPER 91
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/23 (73%), Positives = 22/23 (95%)
Frame = +1
Query: 427 NGNISLEDVVGIAKIMRNRSMAR 495
+GNISL+DV+ IA+IMRNRSMA+
Sbjct: 102 SGNISLDDVIEIARIMRNRSMAK 124
>02_05_0416 + 28791512-28792012
Length = 166
Score = 135 bits (327), Expect = 2e-32
Identities = 64/90 (71%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
Frame = +2
Query: 128 PRKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 304
P K DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2 PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61
Query: 305 QLTVQNRQAQIAVVPSAAALIIRALKEPPR 394
+LTVQNRQA+++VVPSAAAL+I+ALKEP R
Sbjct: 62 KLTVQNRQAKVSVVPSAAALVIKALKEPER 91
Score = 35.9 bits (79), Expect = 0.018
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = +1
Query: 427 NGNISLEDVVGIAKIMRNRSMAR 495
+GNISL+DV+ IA++MR RSMA+
Sbjct: 102 SGNISLDDVIEIARVMRPRSMAK 124
>09_02_0178 + 5399982-5400048,5400421-5400518
Length = 54
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 454 LHLQG-RCC--RLRLIXFCFLRSPGRLLKGSDDKGCCRGNN 341
+H QG RCC RLR + C + GSDD+ CC NN
Sbjct: 19 IHPQGCRCCYFRLRPMIQC-----AKACCGSDDENCCLVNN 54
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 237 DRPRGPILGAKDDVAPTSPPTHRKFTILISFGSNL 133
D GP G DD + T P H + T I F N+
Sbjct: 646 DEDSGPRPGTSDDSSATKPAEHNESTAEILFNPNV 680
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 122 KCPRK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 250
K P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 288 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 151
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 164 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 265
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 213 GAKDDVAPTSPPTHRKFTILISFGSNLRGHFVDYLVQ 103
GA+ ++ P+ P + +I SN VD+LVQ
Sbjct: 245 GAQQELGPSKTPLGLRLEYMICEASNKSSQLVDFLVQ 281
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 367 DKGCCRGNNSYLGL-SVLNCQLHSD 296
D GCC SYLGL +L C++++D
Sbjct: 62 DCGCCYALPSYLGLFHILICKVYAD 86
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 275 LWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 168
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>03_06_0499 - 34354040-34354528
Length = 162
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 399 GHRGGSLRALMIRAAAEGTTAIWACLF*TVSCTVILRP 286
G RGG R+L AA+G A W C CT + P
Sbjct: 79 GERGGEARSL----AAKGAAAAWPCCDNCGGCTKSIPP 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,039
Number of Sequences: 37544
Number of extensions: 294167
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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