Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P11
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919...    28   4.7  
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777...    28   4.7  
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743...    27   6.2  
01_05_0384 - 21668869-21669121,21669802-21669889,21670036-21670168     27   6.2  
10_01_0168 - 1883380-1883594,1884572-1888325                           27   8.2  
08_02_0611 + 19317969-19318778                                         27   8.2  

>09_04_0588 -
           18789971-18790000,18790334-18790507,18791470-18791954,
           18792912-18793266
          Length = 347

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 126 ITGGWVSXFSFDCGDCDLCVNPCLFSIER 212
           I G  V  FSF C  C   ++PC  ++ R
Sbjct: 128 ICGKSVKGFSFRCTSCSFAMHPCCAAMSR 156


>07_03_1115 -
           24076506-24076677,24077169-24077266,24077622-24077743,
           24079059-24079235,24079809-24079897,24079919-24079965,
           24080423-24080519,24080600-24080682,24080716-24080796,
           24081043-24081199,24081323-24081750,24081985-24082014,
           24083180-24083300,24083432-24083697
          Length = 655

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 192 RGLHTGHNPHSRMKXQRPILLLFGFITVMKY 100
           RGL  GHNP++RM+     LL  G+ T   Y
Sbjct: 67  RGLGDGHNPNARMRLHDD-LLTNGYYTTRLY 96


>11_02_0020 +
           7429898-7430131,7432565-7432669,7434535-7434621,
           7435188-7435241,7435338-7435483,7435593-7435719,
           7436200-7436208
          Length = 253

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 229 TESDNKRSMLNRQGFTHRSQSPQSNEKXETHPPVIRFYNCNEI 101
           T  DN R +L      +  +S  +++   T   + R Y CNE+
Sbjct: 135 TNGDNDREILKHSAADYLEESAYASQVLLTREQLERQYTCNEV 177


>01_05_0384 - 21668869-21669121,21669802-21669889,21670036-21670168
          Length = 157

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 250 HRRSDTDTES--DNKRSMLNRQGFTHRSQSPQSNEKXETHPP 131
           H RS+ D E      RS     GF  +S+ P++ +   T PP
Sbjct: 76  HYRSNADVEEMGGGGRSFARHSGFARKSRLPKTPQHSLTSPP 117


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 208 SMLNRQGFTHRSQSPQSNEKXET 140
           S +N  GF HR Q+P SN+  +T
Sbjct: 137 SEMNSFGFIHRQQAPPSNQWRQT 159


>08_02_0611 + 19317969-19318778
          Length = 269

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 132 GGWVSXFSFDCGDCDLCVNPCLFSIE 209
           G  V  F F C D DL ++PC  S+E
Sbjct: 99  GDDVRGFVFHCADRDLDLHPCCASLE 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,550,549
Number of Sequences: 37544
Number of extensions: 197083
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)