Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P05
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    71   1e-13
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    62   5e-11
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    56   3e-09
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   8.4  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   8.4  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 31/57 (54%), Positives = 44/57 (77%)
 Frame = +2

Query: 149 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 319
           + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGSG GAAP AG +A
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAA 76



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 91  VSKAELACVYSALILVDDDV 150
           +S +ELA  YSALIL D+ +
Sbjct: 1   MSASELATSYSALILADEGI 20


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 29/54 (53%), Positives = 41/54 (75%)
 Frame = +2

Query: 149 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 310
           + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGS   AAPAAG
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS-AAAAPAAG 72



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 91  VSKAELACVYSALILVDDDV 150
           +S +ELA  YSALIL D+ +
Sbjct: 1   MSASELATSYSALILADEGI 20


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
 Frame = +2

Query: 149 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-GVGAAPAA 307
           + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ NIGS G  +AP A
Sbjct: 20  IEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTA 73


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 55  GLRQLARSKLKMVSKAELACVYSAL 129
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 263 GHGH*CLPRLWRTDL 219
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 266 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 159
           SGHG    P L +  +  M   L+ PL + W++  +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,811
Number of Sequences: 5004
Number of extensions: 28159
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)