Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_P04
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.11
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.34
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 28 1.0
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 28 1.0
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.4
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 1.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.1
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 4.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 7.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.5
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.11
Identities = 27/110 (24%), Positives = 45/110 (40%)
Frame = +2
Query: 143 EASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDEPSVKWDAEPGQYYTLAMT 322
EA Q+ V+P P + G +VK PT K V +D P + + +
Sbjct: 690 EAGQLNEPVVPPLPPHDETQEPQVGGDVKATEHTQPT--KTPAIVIYDYSPEEENEIELV 747
Query: 323 DPDAPSRKEPTFREWHHWLVGNIQGQRGKLRRNFIPVRGLWTSGKDRPAQ 472
+ + E W WL N +GQ+G N++ + G + + PA+
Sbjct: 748 ENEQIQILEFVDDGW--WLGENSKGQQGLFPSNYVEITGPNETANNPPAE 795
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 481 SSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTTXGIRLRATSTKRSMTTTSL 651
SS T++ +S ST+ SL +TN S ++P S+ L +T+ S T++SL
Sbjct: 142 SSITSSSLASSSTTSSSLASSSTN---STTSATPTSSATSSSLSSTAASNSATSSSL 195
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 86 LFQYIRVLTRAMSTVAKSFEASQVVPDV-IPKAPAALLQVKY 208
LFQ + +LT S A ++ SQV+P + I A AL Q KY
Sbjct: 6 LFQSVGILTPCGSAGAIAYITSQVLPAILIGPADVALAQWKY 47
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 242 LTPTLVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWL 379
+ P L+ EP +KW ++ Q++ D D R P H W+
Sbjct: 299 MPPPLLPQEPGIKW-SKSFQHFLCVCLDKDKTRRPGPQKMLTHPWV 343
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 566 FEIGTFVARSVRESRLVECELRWLF 492
F +G FVARS+ +SR++ + LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 576 FAKKYNLXDPIAGNFYEAQYDDYVPI 653
F K+Y DP AGN ++A YDD + +
Sbjct: 517 FYKQYKPFDP-AGNKHDANYDDIIEL 541
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 496 NHRSSHSTSRDSLTLRATNVPISKLPSSPRSTTXGIRLRATSTKRS 633
+++ S STS T A N I++ +SP S++ ++T+T +S
Sbjct: 131 DNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATTQS 176
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 457 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 582
+Q +D+ S ++NH S+H T D S + ++ P +LP+SP
Sbjct: 36 KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 164 DVIPKAPAALLQVKYPSGVEVKEGNELTPTLVKDE 268
D+I K L++ +P G + LTP VK E
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE 1028
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 481 SSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTTXGIRLRATSTKRSMTTTSLF 654
SS + + + TS SLT +P + LP+S + T + +T+ S S F
Sbjct: 391 SSFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTF 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,122
Number of Sequences: 5004
Number of extensions: 61387
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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