Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_P02
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 117 2e-27
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 116 4e-27
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 116 5e-27
04_04_0761 + 27841337-27841479,27842220-27842223,27842265-27843371 28 2.1
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 27 3.8
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 3.8
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 27 5.0
05_07_0219 - 28474661-28475146,28475979-28476644 26 8.7
03_02_0347 - 7676510-7677832 26 8.7
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 117 bits (282), Expect = 2e-27
Identities = 50/94 (53%), Positives = 65/94 (69%)
Frame = +1
Query: 16 IVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAX 195
++ S + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 16 LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75
Query: 196 XXXXXXXXXMRHLKIVRRRFXXGFKEGKPTPPKE 297
MR+++ V RRF F+EG P++
Sbjct: 76 RRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRK 109
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 116 bits (280), Expect = 4e-27
Identities = 50/88 (56%), Positives = 62/88 (70%)
Frame = +1
Query: 34 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 213
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 214 XXXMRHLKIVRRRFXXGFKEGKPTPPKE 297
MR+++ V RRF F+EG P++
Sbjct: 61 TGRMRYMRHVPRRFKSNFREGTEATPRK 88
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 116 bits (279), Expect = 5e-27
Identities = 50/88 (56%), Positives = 62/88 (70%)
Frame = +1
Query: 34 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 213
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 214 XXXMRHLKIVRRRFXXGFKEGKPTPPKE 297
MR+L+ V +RF F+EG P++
Sbjct: 61 TGRMRYLRHVPKRFKSNFREGTEAAPRK 88
>04_04_0761 + 27841337-27841479,27842220-27842223,27842265-27843371
Length = 417
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 1 KGFFRIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYH 117
+GF + D+M S FG H L R+C S+ H
Sbjct: 57 EGFDNLGVRDEMIFSVSLFGSSHQSIHKLYRKCWSSNSH 95
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 147 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 242
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +1
Query: 58 GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 162
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 46 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 129
T +FG K HT CR CG +S++ +S
Sbjct: 26 TYTFGTHTAK-HTFCRVCGITSFYTPRS 52
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 22 KSDKMT-KGTSSFGKRRNKTHTLCRRCGR 105
KSD+ + G F + NK+ CRRCG+
Sbjct: 322 KSDEASGNGEKKFRGKFNKSKIECRRCGK 350
>03_02_0347 - 7676510-7677832
Length = 440
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 169 IVILLQDIHIGRILIFECDMTIYHIFCIT 83
++ LL+ + IGR+ +++ D + H F T
Sbjct: 53 VLPLLEGLGIGRVRLYDADPAVLHAFAKT 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,193,078
Number of Sequences: 37544
Number of extensions: 165325
Number of successful extensions: 341
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -