Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_O21
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0105 - 836347-836769,837740-837937                              132   2e-31
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...   132   2e-31
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408...    29   3.2  
08_01_0054 - 367770-370166                                             28   7.5  
01_05_0223 - 19467303-19467326,19467485-19467601,19468143-194682...    28   7.5  
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704...    27   9.9  

>03_01_0105 - 836347-836769,837740-837937
          Length = 206

 Score =  132 bits (319), Expect = 2e-31
 Identities = 57/108 (52%), Positives = 77/108 (71%)
 Frame = +3

Query: 330 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAAD 509
           RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K   +T D++NLQK AD
Sbjct: 30  RKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCAD 89

Query: 510 FVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGRL 653
           FV AF+ GF++            +V+SFE+KDVKTL G+HLSRAIGRL
Sbjct: 90  FVHAFMLGFDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRL 137


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score =  132 bits (319), Expect = 2e-31
 Identities = 57/108 (52%), Positives = 77/108 (71%)
 Frame = +3

Query: 330 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAAD 509
           RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K   +T D++NLQK AD
Sbjct: 44  RKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCAD 103

Query: 510 FVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGRL 653
           FV AF+ GF++            +V+SFE+KDVKTL G+HLSRAIGRL
Sbjct: 104 FVHAFMLGFDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRL 151


>10_08_0890 +
           21339976-21340198,21340293-21340402,21340652-21340836,
           21341415-21341757
          Length = 286

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 345 PAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRN 449
           P  R+TP++ESW  I+     H  LQ  F+ + RN
Sbjct: 224 PTGRWTPMRESWGSIWRLDTNH-RLQAPFSIRIRN 257


>08_01_0054 - 367770-370166
          Length = 798

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 472 SGPTF-ISTFLVFVLNLTCSNKCSTIGVKIFSQLSLSGVYL*AGTATFRIATLLSLG 305
           SG  F I T+ + +L L C N C+   ++IF  L L   +L   T    I  LL  G
Sbjct: 617 SGIKFDIGTYNIILLGL-CQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGG 672


>01_05_0223 -
           19467303-19467326,19467485-19467601,19468143-19468256,
           19468575-19468697,19468846-19468935,19469765-19469890,
           19471942-19471995,19472068-19472142,19472222-19472329,
           19472556-19472627,19473375-19473545
          Length = 357

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 90  FHLNYEPSHKMETENISVDD 149
           F  NYEP+ ++E+E +++DD
Sbjct: 245 FKKNYEPTREIESEEVNLDD 264


>11_06_0349 +
           22565405-22566279,22567774-22569772,22570360-22570478,
           22570835-22571117
          Length = 1091

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 262 RSLEGIEK--NIKKVQTLMRVKLQCEKLRSQLTDIHHLKKAG*RFL 393
           R LE +EK  N+KK+     VK Q +     L+ I HL     +FL
Sbjct: 755 RPLEALEKLTNLKKLAIYKLVKFQAKDDELLLSAIEHLSSCSLKFL 800


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,922
Number of Sequences: 37544
Number of extensions: 269778
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)