Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_O19
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0164 + 15265878-15268701,15268782-15269200                       29   3.3  
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726...    29   4.3  
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964...    28   7.5  
09_04_0598 + 18875270-18875437,18875547-18876179                       27   9.9  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   9.9  

>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 WFKNDSPVYEYDVESNELIDSGPTSI 494
           W  N + +Y  DVE+N L D  PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332


>01_01_0920 +
           7264498-7264573,7264705-7264745,7265339-7265408,
           7265500-7265648,7266143-7266238,7266326-7266396,
           7266510-7266571,7266651-7266714,7267608-7267692,
           7267777-7267903,7268016-7268080,7268739-7268796,
           7268927-7269066,7269624-7269693,7269910-7269981,
           7270188-7270234,7270468-7270566
          Length = 463

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 318 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 446
           S  +GP P+  HT   T ++T     A S  P   W K+   +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397


>01_01_1198 -
           9643469-9643585,9643740-9643805,9643905-9644489,
           9645159-9645994,9646597-9646783,9647572-9647737,
           9648431-9648520,9649122-9649184,9649277-9649413,
           9649835-9650349,9651130-9651231,9651581-9651602
          Length = 961

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
 Frame = +3

Query: 270 IENGVQAKSDGSHKYLSITQGPLPS-----------YAHTPGTTIELTCEAAGSPAPSVH 416
           I NG+    DG   +LSIT G L             + H PG  +    +A  +   +V 
Sbjct: 249 IRNGI-VSYDGRKLFLSITNGSLVEVTELQPLRWTYHGHPPGGDVSYISDAGNARPGTVF 307

Query: 417 WFKNDSPVYEYDVES 461
              +   +YE+D ES
Sbjct: 308 TVSSTGDLYEFDRES 322


>09_04_0598 + 18875270-18875437,18875547-18876179
          Length = 266

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 144 QYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSI 323
           +Y  A+  + L+LLF VA L  S     LN+   L++     +  G  A  DG  + L +
Sbjct: 114 EYMMALKYVALLLLFLVAFLSHSLAICFLNEASFLINTSPTLLAGGDGAGDDGGRRLLGL 173


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 123  FFLRESHQYYRAVV--RMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDN-----SIENG 281
            FFL+ +      +    +H +LL ++  L G+  ++     + LL DI+      ++E+ 
Sbjct: 2212 FFLKHAEAVGEEIPARELHEILLLSLQWLSGTMTNSSPVYPLHLLRDIETRVWLLAVESE 2271

Query: 282  VQAKSDGSHKYLSITQ 329
             Q K+DG +   S+TQ
Sbjct: 2272 SQCKADGEYAPSSVTQ 2287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,900
Number of Sequences: 37544
Number of extensions: 311264
Number of successful extensions: 828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)