Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_O16
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 252 2e-67
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 252 2e-67
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 188 2e-48
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 167 6e-42
02_02_0196 + 7685933-7685961,7686086-7686284 88 4e-18
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 44 9e-05
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.23
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.39
08_02_0286 - 15326876-15328135 28 4.8
01_01_0582 - 4317216-4317731 28 4.8
04_04_0641 + 26896986-26897257,26897263-26897437 27 8.5
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 252 bits (617), Expect = 2e-67
Identities = 120/161 (74%), Positives = 134/161 (83%)
Frame = +2
Query: 53 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFXKAXYTVRSFGIRRNEKIAVH 232
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVF KA YTVRSFGIRRNEKIA +
Sbjct: 11 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70
Query: 233 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 412
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 71 VTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
Query: 413 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 535
VVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 131 VVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 252 bits (617), Expect = 2e-67
Identities = 120/161 (74%), Positives = 134/161 (83%)
Frame = +2
Query: 53 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFXKAXYTVRSFGIRRNEKIAVH 232
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVF KA YTVRSFGIRRNEKIA +
Sbjct: 11 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70
Query: 233 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 412
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 71 VTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130
Query: 413 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 535
VVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 131 VVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 188 bits (459), Expect = 2e-48
Identities = 99/163 (60%), Positives = 116/163 (71%), Gaps = 2/163 (1%)
Frame = +2
Query: 53 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFXKAXYTVRSFGIRRNEKIAVH 232
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVF KA YTVRSFGIRRNEKIA +
Sbjct: 11 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70
Query: 233 CTVRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIGIYGLD 406
TVRG KA ++LE GLK+ DN S T + + +YDPS GIYG+D
Sbjct: 71 VTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYGMD 127
Query: 407 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 535
FYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 128 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 170
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 167 bits (406), Expect = 6e-42
Identities = 82/107 (76%), Positives = 91/107 (85%)
Frame = +2
Query: 53 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFXKAXYTVRSFGIRRNEKIAVH 232
MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVF KA YTVRSFGIRRNEKIA +
Sbjct: 37 MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 96
Query: 233 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 373
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 97 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 88.2 bits (209), Expect = 4e-18
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +2
Query: 374 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 535
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 64
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 44.0 bits (99), Expect = 9e-05
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Frame = +2
Query: 68 IRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFXKAXYTVRSFGIRRNEKIAVHCT 238
+ K+ +N +G E+G+ L A K L +TGQ PV KA +V SF IR I + T
Sbjct: 105 VEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIAVT 164
Query: 239 VRGAKAEEILER----GL-KVREY-ELRRDNFSATGNFGFGIQEH-IDLGIKYDPSIGIY 397
+RG L+R GL + ++ + ++F GNF G+++ + I Y+
Sbjct: 165 LRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKN 224
Query: 398 GLDFYVV 418
G+D +V
Sbjct: 225 GMDVCIV 231
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 215 EKIAVHCTVRGAKAEEILERGLK 283
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 215 EKIAVHCTVRGAKAEEILERGLK 283
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 209 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 307
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -2
Query: 210 RRIPKDRTVYXALXNTGCCPVSCSNTLAARVSLSPDSPTQMF 85
RRI ++ L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
>04_04_0641 + 26896986-26897257,26897263-26897437
Length = 148
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 216 SLRRIPKDRTVYXALXNTGCCPVSCSNTLAARVSLSPDSP 97
S R+ KDR V A + C P++ + LA + P+SP
Sbjct: 45 SAGRLAKDRAVSEAEADDDCLPLNHHSLLADVTATDPNSP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,134
Number of Sequences: 37544
Number of extensions: 319865
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -