Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_O14
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     29   2.0  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    28   4.6  
08_02_0070 - 11897089-11898150,11898389-11898644,11898755-118990...    28   6.0  
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    27   8.0  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 234 DADTGVASVTFSASGFTFLSSVLVXTAEVVF 142
           DAD GVA+V  +  G  F S V +  AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 492 GSMCVGASVDLASSDFGVVASSFLASVDELVSLFLAASVWCSGTILVGSETG 337
           G  CVG + +   S+  V A++      E   L   ++VWC G +L+   TG
Sbjct: 319 GYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITG 370


>08_02_0070 -
           11897089-11898150,11898389-11898644,11898755-11899059,
           11899149-11899550
          Length = 674

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 568 IAKRPKGQNDSTNKAWSIK 512
           + K PKG+NDS  K W  K
Sbjct: 69  VVKAPKGKNDSGTKQWQCK 87


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 555 PRVRMIPPTKLGPSNALACTVGSMCVGASVDLASSDFGVVA 433
           PR   +P   L  S  L    G++CVGA+  L   D G  A
Sbjct: 82  PRAPPVPRRALAAS--LLAAAGALCVGAAASLVPEDSGWAA 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,014
Number of Sequences: 37544
Number of extensions: 183531
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)