Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_O08
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 27 3.1
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 4.2
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 26 5.5
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 5.5
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 26 5.5
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.3
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.3
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 9.6
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 3.1
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Frame = +3
Query: 252 MFGTELAVLELINEVCSSAVHLHSGKLSANAAAECRKAVNETCGVDIVAFLKRSDNIGKS 431
+F +L L+ V S L G + A + +NE +IV L N+G
Sbjct: 41 VFDFKLPALQYETTVTSLDNFLIGGSTTLYTATVNHEDLNEPKSHEIVMLLASDGNVGSF 100
Query: 432 SKSLV-ETMKNSNSSCLKENFGVPVMNLGPHIALNSWTLQDTIKQ 563
+L+ + KN +N+ +N+ + W I Q
Sbjct: 101 ESNLLDDCFKNRIEYAKLQNYNFEFVNVSSLVVPPVWGKMPAILQ 145
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 129 VIVVGCFAMLWP-RILSPLILGHTREQLKPNEFDREAGCCEVMFGTELAVLELINEVCSS 305
++ + CF+++ + SP+ L T +L + D C +MF A +E ++ ++
Sbjct: 6 ILFIVCFSLVSAFKDTSPIFLFSTNSKLPKSSDDSSISTCPMMFFD--AAIEALSTCNTA 63
Query: 306 AVHLHSGKLSAN 341
+ +H L N
Sbjct: 64 TLIIHQPGLEVN 75
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 402 LKRSDNIGKSSKSLVETMKNSNSSCL 479
++RSDN+ S+ ++ K NS C+
Sbjct: 170 IQRSDNLSTQSRMFYKSAKKQNSCCI 195
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 156 LWPRILSPLILGHTREQLKPNE----FDREAGCCEVMFGTELAVLELINEVCSSAVHLHS 323
+W + SPLILG+ + P + ++E GT A L + + L S
Sbjct: 287 MWAILKSPLILGNDVSSMSPMDKLIVSNKELISINQDIGTNPAALIWKKKYGDEYIELFS 346
Query: 324 GKLSAN 341
G+LS N
Sbjct: 347 GRLSNN 352
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 354 CRKAVNETCGVDIVAFLKRSDNIGKSSKSLVETMKNSNSS 473
C + ++E+ +DI+ NI +SSK + +K NSS
Sbjct: 305 CIEDLHESVNLDILCLKDILRNIAQSSKEAMYIVKRHNSS 344
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 363 LFYIQLQHLQRAFRYVDGLLSCKPRLSVPVLPVQYRTL 250
LFY + L ++ R+ + +S PRLS +LP Q R L
Sbjct: 191 LFYDCARKLAKSLRFAN--VSRDPRLSSELLPFQMRVL 226
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 438 SLVETMKNSNSSCLKENFGVPVMNLGPHIAL 530
S +T +N++CL + V V N PH+AL
Sbjct: 89 SSTDTRLRANAACLLACYMVLVQNWPPHLAL 119
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 294 PRLSVPVLPVQYRTLPHSIL 235
PR++VP+LP +Y L HS+L
Sbjct: 220 PRIAVPLLPHEYHHL-HSLL 238
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 493 PKFSFRHELLLFFMVSTRLLEDF 425
PK S++H+ LLFF+ + F
Sbjct: 304 PKLSWKHKFLLFFLAEVAFIAYF 326
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 431 RFSYVVAAFEECYYINTTGLVHSFSTFSCSICRE 330
R SY++ EEC +N + ++ CS+ ++
Sbjct: 434 RLSYILDTLEECPLLNIKTAILNYYQKQCSLVKD 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,709
Number of Sequences: 5004
Number of extensions: 57146
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -