Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_O07
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.2  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   8.7  

>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 59  VFLFYLGFYSK----DLILEMVSFNSFNLIVFILFYLSTGLTVFYTFRLII 199
           VFL +  FYS+     +I   + +NSF +++F+       L   +TF L I
Sbjct: 118 VFLLFFKFYSRLFFFRIIPSHILYNSFRIVLFLSHASPAILHTIFTFTLSI 168


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 50  LCVVFLFYLGFYSKDLILEMVSFNSFNLIVFILFYLSTGLTVFY 181
           L VVFL+ +  +    +L+  +F S     F++ Y++TG  VFY
Sbjct: 17  LFVVFLWLISSFLTSSLLDDDNFFS----PFLITYINTGTFVFY 56


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 98  ILEMVSFNSFNLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLI 229
           +L   S + +  +V IL+YL   L VF++    + V+I D N +
Sbjct: 231 VLHDGSLSIWQSLVMILYYLLYVLFVFFSGSSGVSVVITDENYL 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,216
Number of Sequences: 5004
Number of extensions: 18106
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)