Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_N19
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-6|CAA86666.1| 503|Caenorhabditis elegans Hypothetical pr... 90 1e-18
Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical p... 41 7e-04
Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical p... 41 7e-04
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 31 0.94
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 31 0.94
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 31 0.94
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 30 1.2
Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical p... 28 6.7
Z73911-3|CAC42339.1| 324|Caenorhabditis elegans Hypothetical pr... 27 8.8
U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alph... 27 8.8
U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alph... 27 8.8
AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeri... 27 8.8
>Z46676-6|CAA86666.1| 503|Caenorhabditis elegans Hypothetical
protein C08B11.8 protein.
Length = 503
Score = 90.2 bits (214), Expect = 1e-18
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +2
Query: 176 LLVRWCVAAYPYSGYRKPPMYGDFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPP 355
L + ++ P+SG +PPMYGD+EAQRHW EITV+ P+ WY N T NDL YWG+DYPP
Sbjct: 57 LCFQLAISLNPHSGESQPPMYGDYEAQRHWMEITVNLPIEQWYLNGTHNDLLYWGLDYPP 116
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/97 (34%), Positives = 54/97 (55%)
Frame = +3
Query: 357 LSAYHSLLMGLVADWLDPESVRLFASRGYEDDSHKTFMRWTVFLSDLYFYATAVLCICID 536
++AYH L+G++++ ++ + V L SRGYE +HK FMR + + FY ++
Sbjct: 117 ITAYHHYLLGVISNKINKKWVELTTSRGYESIAHKLFMRLSAIIPFYIFYLPPLIFYF-- 174
Query: 537 AERVRAKETKWVFKRTDLSTILFLLYPGLILIDHGHF 647
R+K K + + L LLYP L++ID+GHF
Sbjct: 175 ---TRSK------KMSPILYALALLYPSLLVIDNGHF 202
>Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical
protein C08H9.3b protein.
Length = 123
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 242 DFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPPFIS 364
DFE R+W +T P+ WY T W +DYPPF +
Sbjct: 29 DFEVHRNWMAVTWQRPLCEWYTEATSE----WTLDYPPFFA 65
>Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical
protein C08H9.3a protein.
Length = 758
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 242 DFEAQRHWQEITVHTPVTTWYHNTTQNDLEYWGMDYPPFIS 364
DFE R+W +T P+ WY T W +DYPPF +
Sbjct: 29 DFEVHRNWMAVTWQRPLCEWYTEATSE----WTLDYPPFFA 65
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 165 YFSHYLFVGVLPHI-----RILDIVNHRCMETSKLRDIGKRLLFTHR*QRGIITRRKMTL 329
+ SH+ FV + + RI+D NHR + + L+D+ +L H + + K
Sbjct: 148 FISHHPFVSIFHQVLLLLKRIIDSSNHRAAQRTGLKDVVWAILTGHYNEPIVPEVMKEIK 207
Query: 330 NIGAWTILRLSA 365
I W ++ LS+
Sbjct: 208 EIETWILMLLSS 219
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 165 YFSHYLFVGVLPHI-----RILDIVNHRCMETSKLRDIGKRLLFTHR*QRGIITRRKMTL 329
+ SH+ FV + + RI+D NHR + + L+D+ +L H + + K
Sbjct: 148 FISHHPFVSIFHQVLLLLKRIIDSSNHRAAQRTGLKDVVWAILTGHYNEPIVPEVMKEIK 207
Query: 330 NIGAWTILRLSA 365
I W ++ LS+
Sbjct: 208 EIETWILMLLSS 219
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 165 YFSHYLFVGVLPHI-----RILDIVNHRCMETSKLRDIGKRLLFTHR*QRGIITRRKMTL 329
+ SH+ FV + + RI+D NHR + + L+D+ +L H + + K
Sbjct: 148 FISHHPFVSIFHQVLLLLKRIIDSSNHRAAQRTGLKDVVWAILTGHYNEPIVPEVMKEIK 207
Query: 330 NIGAWTILRLSA 365
I W ++ LS+
Sbjct: 208 EIETWILMLLSS 219
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +2
Query: 188 WCVAAYPYSGYRK-PPMYGDFEAQRHWQEITVHTPVTTWYHNTT 316
W PYSGYR PP+Y +E + T P T TT
Sbjct: 253 WTYTVPPYSGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTT 296
>Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 547 TRSASMHIHRTAVA*KYKSLRNTVQRMNVL*ESSS*PLDAKSLTDSGSSQSATRPI 380
T+ ++ +HR+ ++LRN + S L++ +LT SGS+ S T P+
Sbjct: 188 TQKSTNGVHRSTSNSSAETLRNNSVSAATVSPSDDNSLNSPALTSSGSAGSGTPPL 243
>Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical
protein M04G12.4b protein.
Length = 550
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 547 TRSASMHIHRTAVA*KYKSLRNTVQRMNVL*ESSS*PLDAKSLTDSGSSQSATRPI 380
T+ ++ +HR+ ++LRN + S L++ +LT SGS+ S T P+
Sbjct: 159 TQKSTNGVHRSTSNSSAETLRNNSVSAATVSPSDDNSLNSPALTSSGSAGSGTPPL 214
>Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 547 TRSASMHIHRTAVA*KYKSLRNTVQRMNVL*ESSS*PLDAKSLTDSGSSQSATRPI 380
T+ ++ +HR+ ++LRN + S L++ +LT SGS+ S T P+
Sbjct: 188 TQKSTNGVHRSTSNSSAETLRNNSVSAATVSPSDDNSLNSPALTSSGSAGSGTPPL 243
>Z73911-3|CAC42339.1| 324|Caenorhabditis elegans Hypothetical
protein T12A7.7 protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 447 DDSHKTFMRWTVFLSDLYFYATAVLCIC 530
D +KT ++ + + +FY T+VLC C
Sbjct: 115 DAKYKTLVKVAADVLNAFFYLTSVLCTC 142
>U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform a protein.
Length = 368
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 477 TVFLSDLYFYATAVLCICIDAERVRAKETKWVFKRTDLSTILFLL 611
T+ ++ + F T V + ID R++ KW+ D +LF++
Sbjct: 182 TMSINSIVFEYTGVSLLMIDVGGQRSERKKWLHLFDDAKVVLFVI 226
>U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform b protein.
Length = 408
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 477 TVFLSDLYFYATAVLCICIDAERVRAKETKWVFKRTDLSTILFLL 611
T+ ++ + F T V + ID R++ KW+ D +LF++
Sbjct: 222 TMSINSIVFEYTGVSLLMIDVGGQRSERKKWLHLFDDAKVVLFVI 266
>AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 368
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 477 TVFLSDLYFYATAVLCICIDAERVRAKETKWVFKRTDLSTILFLL 611
T+ ++ + F T V + ID R++ KW+ D +LF++
Sbjct: 182 TMSINSIVFEYTGVSLLMIDVGGQRSERKKWLHLFDDAKVVLFVI 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630,325
Number of Sequences: 27780
Number of extensions: 347413
Number of successful extensions: 875
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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