Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_N13
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    37   0.002
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   0.72 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   2.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   2.9  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   6.7  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.7  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   6.7  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   6.7  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    25   6.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.9  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   8.9  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 205 PWCWYCNREFDDEKILIQHQKAKHFKCHIC 294
           P C +CN  F D+  L +H + KH +C+IC
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKHERCYIC 274



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 274 HFKCHICHKKLYTGPGLSIHCMQVHK 351
           H KC  C+   Y    L  HC + H+
Sbjct: 244 HPKCEFCNTHFYDDDELFKHCREKHE 269


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 277 NASLSDVG*ESFRRQTPCYNTSTKVWMPSSSSY 179
           N SL +V    F++QTP YN + KV +  SS +
Sbjct: 819 NYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 274 HFKCHICHKKLYTGPGLSI 330
           +F C++C   +YTG GL++
Sbjct: 380 YFACYLCSVGVYTGAGLNV 398


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +1

Query: 208 WCWY--CNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIHCMQVH 348
           +C Y  C + F  ++ L +H++     K F C  C++       L+ H  Q+H
Sbjct: 27  YCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 331 HCMQVHKEAIDKVPNSLPNRSN 396
           H   VHKE++ K+  +L +R+N
Sbjct: 119 HKTDVHKESVSKLSKNLESRNN 140


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 211 CWYCNRE-FDDEKILIQHQKAKHFKC 285
           CW+CN+  F +  +L   Q A H  C
Sbjct: 837 CWHCNQPLFSEPFVLFPCQHAFHRSC 862


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 295 HKKLYTGPGLSIHCMQVHKEAIDKVPNSLPN-RSNIEIEMYGMEG 426
           ++ ++TG   ++ C+++H+E  + + NS  N    +E+ M    G
Sbjct: 433 NENIFTG-NQTMKCLEIHQELSELIRNSSTNYLEPVEVRMQNYSG 476


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 262 QKAKHFK-CHICHKKLYTGPGLSIH-CMQVHKEAIDK 366
           +KA+ ++ C +C+KK Y+    S H   + H++ + K
Sbjct: 64  KKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSK 100


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
 Frame = +1

Query: 136 FSFKFNR*SLIVKMGRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCH----ICHKK 303
           +SF + R   ++ +G +K   S  + W   +   +  +    +  K F  H    +  KK
Sbjct: 105 YSFDYTRDGRMILLGGRKGHISA-FDWRTGKLLTELHLRETVRDVKWFHNHQYFAVAQKK 163

Query: 304 ---LYTGPGLSIHCMQVHKE--AIDKVPNSL 381
              +Y   G  IHC++ H E  A+D +P  L
Sbjct: 164 YVYVYDNMGTEIHCLKRHIEVNALDFLPYHL 194


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 208 WCWYCNREFDDEKILIQHQKAKHFK 282
           +C  C R FD  + L+ H+K K  K
Sbjct: 57  YCIECARYFDSSQALLVHKKGKVHK 81


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 315 SCVQLFVTNVTFKMLRFLMLDENL 244
           S + LF++ ++FK L F + D NL
Sbjct: 543 SYIDLFISLMSFKNLNFKLFDYNL 566


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 211 CWYCNREFDDEKILIQHQKAKHFKCHICHKKL 306
           C +CN++F    +L        F C++C  +L
Sbjct: 138 CPFCNKKFSSLDVLSLVTNEGTFACNVCGTEL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,593
Number of Sequences: 5004
Number of extensions: 32167
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)